PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021294785.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 582aa    MW: 65099.1 Da    PI: 7.0132
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021294785.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS266.58.6e-821995742374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL  cA a+++g+l+++q+lL  l+elas++gd+++Rla + ++AL ++l++s  + +  l + +++  + +    +l  f+evsP++ f + 
  XP_021294785.1 199 KQLLNPCAIAITTGNLTRVQHLLYVLNELASSTGDANHRLADHGLRALTHHLTSS--SASTGLITFAST--EPKFFQRSLLKFYEVSPWFAFPNN 289
                     689***************************************************3..444444444444..24445555556************* PP

            GRAS  97 taNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAeelgvpfe 177
                     +aN  Il+ +++e    + +Hi+D+++s+G+QWp+Ll+aL+ R+ ++pp +RiT+v++ +++              +   +rL  fA++++++++
  XP_021294785.1 290 VANASILQILAQEpdktRNLHILDIGVSHGVQWPTLLEALTRRSgGPPPLVRITVVAATAEKsqimdtpfsIGPPGHDFYSRLPGFAKSMNINLQ 384
                     ***********999887889************************55666********98877889988887777889999*************** PP

            GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerflealeyysalfd 269
                     +n l ++ l++l++++++ +pgE+l+V+ +++lh+l    ++ +++r+e+Lk+++sl+Pk v+++e+++d+   n ++F+++f++ +ey ++++d
  XP_021294785.1 385 INRLETHPLQNLNTQTIDNSPGETLIVCAQFRLHHLN---HNRPDQRTEFLKVLRSLEPKGVILSENNMDCscsNCGDFATGFSRRVEYLWKFLD 476
                     ****999*****************************8...77777788*******************9776446778****************** PP

            GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363
                     s+++ +    + r + Er++++ e+ ++++++g++    +e +ekW er++ +GF    ++e+a + a++llrk++ ++++rvee+++++ l W+
  XP_021294785.1 477 STSSAF----KGRESEERRVMEGEAAKALTNQGEM----NEGKEKWCERMRGVGFVGEVFGEDAIDGARALLRKYDsNWEMRVEEKDACVGLWWR 563
                     **7775....677777777778889********99....9************************************9999*************** PP

            GRAS 364 drpLvsvSaWr 374
                     ++p+ ++S W+
  XP_021294785.1 564 GQPVSFCSLWK 574
                     **********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    
MIKQLYISRP FSLFTFFLCF KHSFQSRIMT LEEAEPNPTP DHILDWLEDS ISFLPSFLDD  60
PYNSGEINSY QWWDQDQDIG QDLINIGATA IDSPTTAAGA VANTTNSSLI QYDSSFPNPG  120
LPPNSSKKRK PSDDQVPRAA QNRQQKKNQS SKINENEKGK AGLEEVVANK RSAGNKKNSN  180
KSSGNNCNNG NNNEGRWAKQ LLNPCAIAIT TGNLTRVQHL LYVLNELASS TGDANHRLAD  240
HGLRALTHHL TSSSASTGLI TFASTEPKFF QRSLLKFYEV SPWFAFPNNV ANASILQILA  300
QEPDKTRNLH ILDIGVSHGV QWPTLLEALT RRSGGPPPLV RITVVAATAE KSQIMDTPFS  360
IGPPGHDFYS RLPGFAKSMN INLQINRLET HPLQNLNTQT IDNSPGETLI VCAQFRLHHL  420
NHNRPDQRTE FLKVLRSLEP KGVILSENNM DCSCSNCGDF ATGFSRRVEY LWKFLDSTSS  480
AFKGRESEER RVMEGEAAKA LTNQGEMNEG KEKWCERMRG VGFVGEVFGE DAIDGARALL  540
RKYDSNWEMR VEEKDACVGL WWRGQPVSFC SLWKLYIKEE GS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-158GRAS family protein