PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021294776.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

WRKY

Protein Properties

Length: 590aa MW: 63436.4 Da PI: 7.0322

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021294776.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97	1.3e-30	332	390	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ XP_021294776.1 332 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAgGCPVRKQVQRCAEDRTILITTYEGNHNHP 390 7**************************9**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence
MDKGWGLTLD SDPGTKFFPN KTDSGGPFFR LKQQRDMFQF PVSLAGSRED LQGTSSSSSP 60 SGHEKRRVVD EVDFFSDKKT KVVVGGDDKA STVSVKKETS HGEAAPGSDL DINTGLHLLT 120 ANAGSDQSTV DDGVSSDMED KRAKNELAQL QVELQRMNAE NQKLRDMLSH VGNNYSALQM 180 HLVTLMQQQR NQGAETTQEH EVREGKSEGK KHDVIVPRQF MDLGPSGTAE ADEMSHSSSE 240 ERTQSGSPPS NVEIASKDYV KSKNEISQFD QETSSFRDGK RIGREESPAS EGWGPNKVQK 300 LNPAKPVDQS TEATMRKARV SVRARSEAPM ITDGCQWRKY GQKMAKGNPC PRAYYRCTMA 360 GGCPVRKQVQ RCAEDRTILI TTYEGNHNHP LPPAAMAMAS TTAAAASMLL SGSMPSADGI 420 MNQNLLARAI LPCSSSVATI SASAPFPTVT LDLTHSPNPL QLQRPPTQFQ VPFPGQAQNF 480 ASVAASQLPQ VFGQALYNQS KFSGLQLSQD MGSSQLGHQV PHPQLQQPQQ PSLADTVSAA 540 TAAITADPSF TAALAAAITS IIGGGAHPNS SSNTSNNNNS NANTTTTSRQ

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence

MDKGWGLTLD SDPGTKFFPN KTDSGGPFFR LKQQRDMFQF PVSLAGSRED LQGTSSSSSP  60
SGHEKRRVVD EVDFFSDKKT KVVVGGDDKA STVSVKKETS HGEAAPGSDL DINTGLHLLT  120
ANAGSDQSTV DDGVSSDMED KRAKNELAQL QVELQRMNAE NQKLRDMLSH VGNNYSALQM  180
HLVTLMQQQR NQGAETTQEH EVREGKSEGK KHDVIVPRQF MDLGPSGTAE ADEMSHSSSE  240
ERTQSGSPPS NVEIASKDYV KSKNEISQFD QETSSFRDGK RIGREESPAS EGWGPNKVQK  300
LNPAKPVDQS TEATMRKARV SVRARSEAPM ITDGCQWRKY GQKMAKGNPC PRAYYRCTMA  360
GGCPVRKQVQ RCAEDRTILI TTYEGNHNHP LPPAAMAMAS TTAAAASMLL SGSMPSADGI  420
MNQNLLARAI LPCSSSVATI SASAPFPTVT LDLTHSPNPL QLQRPPTQFQ VPFPGQAQNF  480
ASVAASQLPQ VFGQALYNQS KFSGLQLSQD MGSSQLGHQV PHPQLQQPQQ PSLADTVSAA  540
TAAITADPSF TAALAAAITS IIGGGAHPNS SSNTSNNNNS NANTTTTSRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-145	WRKY family protein