PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021294644.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family C3H
Protein Properties Length: 304aa    MW: 33562.5 Da    PI: 8.4437
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021294644.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.95.9e-12108134127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     yk e Cr + ++G+C++G+rC+F+Hg+
  XP_021294644.1 108 YKSEVCRAWEEFGHCRFGSRCQFMHGK 134
                     99***********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    
MDSFYKESNK LNVLNSNIPK LMIPARIRAN YYSSPENLIK YLRSNSLSSS GNSSSGKSSF  60
RSSLSPQSDK TPLNVVEEDV LVMDGVLVAS DTNIVRPGSP SSGSVGFYKS EVCRAWEEFG  120
HCRFGSRCQF MHGKEEERPT CFPFRSKSEA QMYKSYASTM SGTYGSKSRL QHPVIETAAT  180
TAQRDTSTRP HYTSQSSTDP IKPEETIIHS ISTVQPENTH LTANFTMKPM TNKTSTSLIR  240
ADAGATTFTN GTYWSPQDDG IDVTLPSLPG KTPSREDVHA YIDSVLYGPA TKRRLPVFSA  300
FCPE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.29e-08C3H family protein