PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021294397.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family HD-ZIP
Protein Properties Length: 720aa    MW: 78967.6 Da    PI: 6.0039
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021294397.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox629.1e-2057112156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  XP_021294397.1  57 KKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 112
                     688999***********************************************998 PP
2START222.61.2e-692464651206
                     HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     ela +a++el+++a+++ep+Wv      + +n+de+l++f+++ +      ++ea+r+s+vv+m++++lve+l+d++ qW+  +     +a+tle
  XP_021294397.1 246 ELAVAAMEELIRMAQSGEPLWVPGEnstDVLNEDEYLRTFPRGIGpkplgLRSEASRESAVVIMNHVNLVEILMDVN-QWSSAFCgivsRAMTLE 339
                     57899*****************9888889*************999********************************.******99999****** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                     v+s+g      galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+d+ ++ p    + +++++pSg+li++++ng+skv+wvehv+
  XP_021294397.1 340 VLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHTEGTWAVVDVSLDNLRPSP----MSKCRRRPSGCLIQELPNGYSKVIWVEHVE 430
                     ***********************************************************99....788999************************ PP

                     --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++r +h+++r+lv+sgla+gak+wvatl+rqce+
  XP_021294397.1 431 VDDRAVHNIYRPLVNSGLAFGAKRWVATLDRQCER 465
                     *********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    
MFSPNLFDSP QMFDMTHKTS EGELGKIRDD DYETKSGTET MDVPSGDEQD PNQRPKKKRY  60
HRHTQRQIQE MEAFFKECPH PDDKQRKELS RELGLEPLQV KFWFQNKRTQ MKAQHERHEN  120
AILKAENEKL RAENNRYKEA LSNATCPNCG GPAALGEMSF DEQHLRIENA RLREEIDRIS  180
GIAAKYVGKP LSSFPHISSH LHSRSLDPGV SNFGTQSGFV GEMYGGGDLL RSVSGPTEAD  240
KPMIVELAVA AMEELIRMAQ SGEPLWVPGE NSTDVLNEDE YLRTFPRGIG PKPLGLRSEA  300
SRESAVVIMN HVNLVEILMD VNQWSSAFCG IVSRAMTLEV LSTGVAGNYN GALQVMTAEF  360
QVPSPLVPTR ENYFVRYCKQ HTEGTWAVVD VSLDNLRPSP MSKCRRRPSG CLIQELPNGY  420
SKVIWVEHVE VDDRAVHNIY RPLVNSGLAF GAKRWVATLD RQCERLASSM ASNIPAGDLC  480
VITSPEGRKS MLKLAERMVT SFCTGVGAST AHAWTTLSAT GSDDVRVMTR KSMDDPGRPP  540
GIVLSAATSF WIPVPPKRVF DFLRDENSRS EWDILSNGGL VQEMAHIANG RDPGNCVSLL  600
RVNSANSSQS NMLILQESCS DATGSYVIYA PVDIVAMNVV LSGGDPDYVA LLPSGFAILP  660
DGPGLNGGGI LEIGSGGSLL TVAFQILVDS VPTAKLSLGS VATVNSLIKC TVERIKAAVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein