PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021294108.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

TALE

Protein Properties

Length: 359aa MW: 40450.4 Da PI: 6.7042

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021294108.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.7	2.2e-09	287	321	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ XP_021294108.1 287 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 321 569*****************************885 PP
2	ELK	41.1	3.6e-14	241	262	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ XP_021294108.1 241 ELKGQLLRKYSGYLGSLKQEFM 262 9********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MEGGSNSTSC MIAFGHNGHG LCPMTMMPLM TSHPHHQHHH HHHPHPPNSD SYSLFLPLPP 60 TNNQDQNHNS SSGSSMILDD HNNNNNSTNN NTGCYFMETN DGSSSSVKAK IMAHPHYHRL 120 LAAYVNCQKV GAPPEVVARL EEACASAATM GPSGTGCLGE DPALDQFMEA YCEMLTKYEQ 180 ELSKPFKEAM LFLQRVECQF KALTVSSPSS ACGEAADRNG SSEEEVDVNN NFIDPLAEDR 240 ELKGQLLRKY SGYLGSLKQE FMKKRKKGKL PKEARQQLLD WWSRHYKWPY PSESQKLALA 300 ESTGLDQKQI NNWFINQRKR HWKPSEDMQF VVMDATHPHY YMDNVLGNPF PMDLSPTLL

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MEGGSNSTSC MIAFGHNGHG LCPMTMMPLM TSHPHHQHHH HHHPHPPNSD SYSLFLPLPP  60
TNNQDQNHNS SSGSSMILDD HNNNNNSTNN NTGCYFMETN DGSSSSVKAK IMAHPHYHRL  120
LAAYVNCQKV GAPPEVVARL EEACASAATM GPSGTGCLGE DPALDQFMEA YCEMLTKYEQ  180
ELSKPFKEAM LFLQRVECQF KALTVSSPSS ACGEAADRNG SSEEEVDVNN NFIDPLAEDR  240
ELKGQLLRKY SGYLGSLKQE FMKKRKKGKL PKEARQQLLD WWSRHYKWPY PSESQKLALA  300
ESTGLDQKQI NNWFINQRKR HWKPSEDMQF VVMDATHPHY YMDNVLGNPF PMDLSPTLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	257	266	LKQEFMKKRK
2	263	267	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-146	TALE family protein