PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021294059.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

LBD

Protein Properties

Length: 288aa MW: 32196.9 Da PI: 5.2846

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021294059.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.2	1.8e-40	10	110	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkC+++C+lapyfpaeq++ f+n+hklFG+sn+lk+lk+l++ ++ +am+s+ y++++r + PvyG++gvi++lq q++ +++el+ XP_021294059.1 10 ACAACKYQRRKCTPECPLAPYFPAEQARVFQNAHKLFGVSNILKILKNLNPAQQAEAMRSIKYQSNVRDQFPVYGCLGVIRQLQYQIQLVEEELH 104 7********************************************************************************************** PP DUF260 96 llkeel 101 +++++l XP_021294059.1 105 AVHAQL 110 *99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence
MTLKGGTASA CAACKYQRRK CTPECPLAPY FPAEQARVFQ NAHKLFGVSN ILKILKNLNP 60 AQQAEAMRSI KYQSNVRDQF PVYGCLGVIR QLQYQIQLVE EELHAVHAQL EMYRQHHQIS 120 SIADDVPSQL ELGMAPPSNA LPLFNQVPQQ HYNSLASLPV SMQHSYSNSS NVDYSSSYMD 180 SKENVANSLW VQHPFATNNN TDNGSTMAIQ SQLVAPQTMA VQQQVVQDYD EIHPFFDAID 240 DRQSYIDSKE PYESSSEESL KDTTQSVEHV AENELKSAAA CFSLTSVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	2e-61	LBD family protein