PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021293768.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family HD-ZIP
Protein Properties Length: 838aa    MW: 92187.8 Da    PI: 6.4666
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021293768.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-181775357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_021293768.1 17 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                    5679*****************************************************97 PP
2START1816.9e-571613692205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+ell+d++ W ++++++++l+v+ ++  g+++l 
  XP_021293768.1 161 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAELLKDRPSWFRDCRAVDVLNVLPTAngGTIELL 254
                     7899******************************************************.9*************************9999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l+
  XP_021293768.1 255 YMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLKNTQNGPSmpaVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLY 349
                     ********************************************999999********************************************* PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s+++ ++kt++a+l+++++
  XP_021293768.1 350 ESSTVLAQKTTMAALRQLRQ 369
                     ****************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    
MAMSCKDGKL GSLDNGKYVR YTPEQVEALE RLYHECPKPS SIRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VYENGYFRQH  120
TQNATLATKD PSCESVVTSG QHHVTPQHPP RDASPAGLLS IAEETLAEFL SKATGTAVEW  180
VQMPGMKPGP DSIGIVAISH GCTGVAARAC GLVGLEPTRV AELLKDRPSW FRDCRAVDVL  240
NVLPTANGGT IELLYMQLYA PTTLAPARDF WLLRYTSVLE DGSLVVCERS LKNTQNGPSM  300
PAVQHFVRAE MLPSGYLIRP CEGGGSIIHI VDHMDLEPWS VPEVLRPLYE SSTVLAQKTT  360
MAALRQLRQI AQEVSQSNVT GWGRRPAALR ALSQRLSRGF NEALNGFTDE GWSMMGNDGM  420
DDVTILVNSS PEKLMGLNLS FANGFPSVSN AVLCAKASML LQNVPPAILL RFLREHRSEW  480
ADSSIDAYSA AAVKVGPCSL PGSRVGGFGG QVILPLAHTI EHEEFLEVIK LEGVAHSPED  540
AIMPRDVFLL QLCSGMDENA VGTCAELIFA PIDASFADDA PLLPSGFRII PLDSGKEASS  600
PNRTLDLASA LEIGPTGNKA SNDYSGNSGC MRSVMTIAFE FAFESHMQEH VASMARQYVR  660
SIISSVQRVA LALSPSHLSS HAGLRTPLGT PEAQTLARWI CQSYRLYMGV ELLKSCSEGS  720
ETILKTLWHH SDAIMCCSLK ALPVFTFANQ AGLDMLETTL VALQDITLEK IFDDHGRKTL  780
CTEFPQIMQQ GFACLQGGIC LSSMGRPVSY ERAVAWKVLN EEENAHCICF MFINWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein