PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021293671.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 548aa    MW: 61142.1 Da    PI: 6.2574
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021293671.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS410.61.4e-1251785481374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+++L++c +a+++gd+     l+  l++++s +g+p+qRl ay++e+L+arl +s+s++ykal+++e +   sse +++++++++++P+ kf++
  XP_021293671.1 178 LKQVLVACGQALHEGDMPTMAGLMHVLEKMVSVSGEPIQRLGAYVLEGLRARLESSGSSIYKALKCKEPT---SSELMSYMHILFKICPYWKFAY 269
                     5799*****************************************************************9...99******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                       aN  I e +e e ++HiiDf+i qG+QW+ L+ aLa+Rp+gpp +R+Tgv++++s+  +   l+ +g+rL++fA++ +vpfef+  +a +  +
  XP_021293671.1 270 TSANVVIREVMEYEPKIHIIDFQIAQGTQWMFLIAALAKRPGGPPAIRVTGVDDSQSNhaRGGGLNIVGQRLSEFAKSYNVPFEFHD-AAMSGCE 363
                     ******************************************************9988889999***********************.89999** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++le+L+v+pgEalaVn+ + lh+++desvs+ ++rd++L+lvkslsPk+v++veqe+++n+++F+ r le+l+yy+a+f+s+++  +r++++ri
  XP_021293671.1 364 VQLEHLKVQPGEALAVNFPYVLHHMPDESVSTWNHRDRLLRLVKSLSPKIVTLVEQESNTNTSPFFSRYLETLDYYTAMFESIDVACSRDDKQRI 458
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     + E+++++r+ivn++aceg er+erhe ++kWr+r+++aGF+p+pls+++++ ++ ll+ ++++ yr+ee++g+l+lgW +r++ + SaWr
  XP_021293671.1 459 SAEQHCVARDIVNMIACEGPERVERHELFGKWRSRFTMAGFSPYPLSSSVTMAVRDLLKDYNNN-YRLEEREGALYLGWINRAMATSSAWR 548
                     **************************************************************66.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    
MQTSQKHQTS GSIHRLYHQP VQEIEALCLP HIQILDNNAC SDVGSQGTSV SFQTYKDQFF  60
TLESSTATAG FVVYDSPSAV SISSSRSPFS PQGSQSYLSD PHHSPDNTYG SPVSGSSIVD  120
DGNEWKHKLR ELEISLLGPE SDVIDSCNCC FSSGAHQAAS MASFNCNQLV EMIPRLDLKQ  180
VLVACGQALH EGDMPTMAGL MHVLEKMVSV SGEPIQRLGA YVLEGLRARL ESSGSSIYKA  240
LKCKEPTSSE LMSYMHILFK ICPYWKFAYT SANVVIREVM EYEPKIHIID FQIAQGTQWM  300
FLIAALAKRP GGPPAIRVTG VDDSQSNHAR GGGLNIVGQR LSEFAKSYNV PFEFHDAAMS  360
GCEVQLEHLK VQPGEALAVN FPYVLHHMPD ESVSTWNHRD RLLRLVKSLS PKIVTLVEQE  420
SNTNTSPFFS RYLETLDYYT AMFESIDVAC SRDDKQRISA EQHCVARDIV NMIACEGPER  480
VERHELFGKW RSRFTMAGFS PYPLSSSVTM AVRDLLKDYN NNYRLEEREG ALYLGWINRA  540
MATSSAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0GRAS family protein