PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021293486.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 502aa    MW: 56631.9 Da    PI: 6.9071
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021293486.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS371.61e-1131335022374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfsh 95 
                      ++L++cAeav+ +d+  a+alL++l+ +a   g+++qR+a++f+++La rla  +++ +  +  + ++++  + e+  al+l +e++P ++f+h
  XP_021293486.1 133 LQQLITCAEAVAYRDKIHASALLSELRANALAFGTSFQRVASCFVQGLADRLALVQPQRAVGVvGALAKAKAATFEKDEALSLVYELCPQIQFGH 227
                     689**************************************************966665555525555555568888899999************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGl....QWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                     ++aN  Ilea+ege+ vH++D++++ Gl    QW  L+q+L  R++ pp +lRiTgvg      +e+l+++g+ L+++A++l+++fef+v v+++
  XP_021293486.1 228 FVANASILEAFEGESFVHVVDLGMTLGLprghQWCHLMQSLVHRAGHPPkRLRITGVGT----CSERLQAIGDDLEHYAKSLKLNFEFSV-VESN 317
                     *********************99886433333*************877779********....9*************************9.7*** PP

            GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                     le+l++e+++++ +Eal++n++lqlh +++es    +   +vL+ +++lsPk++++veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ + 
  XP_021293486.1 318 LENLKPEDFNTSGDEALVINSILQLHCVVKESRGALN---SVLQKLRELSPKLLILVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDT 409
                     *****************************88877777...8****************************************************** PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+p+p++  + +qak  l+k+k  +g ++ e++g+lvlgWk++p++++S+W+
  XP_021293486.1 410 RRAKMEQFYFAEEIKNIVSCEGPDRIERHERVDQWRRRMSRAGFQPAPIK--MITQAKQWLEKIKvCEGNTIVEDKGCLVLGWKSKPIIAASCWK 502
                     ************************************************96..689***************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    
MEPVLRLRPR LYGDNKSSEV MTFDLNLPGI QIYPFSCPIY QNWPIFYETR NHKRLKQEHL  60
MDVSIGSNGN SDNSDGSTNS LTRLPRLQFR DHVWAYAQRY LTIVAMEEAA VAMTGGDENE  120
IKEEEGGEGM RLLQQLITCA EAVAYRDKIH ASALLSELRA NALAFGTSFQ RVASCFVQGL  180
ADRLALVQPQ RAVGVVGALA KAKAATFEKD EALSLVYELC PQIQFGHFVA NASILEAFEG  240
ESFVHVVDLG MTLGLPRGHQ WCHLMQSLVH RAGHPPKRLR ITGVGTCSER LQAIGDDLEH  300
YAKSLKLNFE FSVVESNLEN LKPEDFNTSG DEALVINSIL QLHCVVKESR GALNSVLQKL  360
RELSPKLLIL VEQDSSHNGP FFLGRFMEAL HYYSAIFDSL DAMLPKYDTR RAKMEQFYFA  420
EEIKNIVSCE GPDRIERHER VDQWRRRMSR AGFQPAPIKM ITQAKQWLEK IKVCEGNTIV  480
EDKGCLVLGW KSKPIIAASC WK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.17e-77GRAS family protein