PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021293472.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

SBP

Protein Properties

Length: 511aa MW: 56563.5 Da PI: 8.5658

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021293472.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.7	1.1e-40	171	246	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv gC++dls+ k+yh+rhkvCe+hsk+++v+v+g+eqrfCqqCsrfh+l efD++krsCr+rLa+hnerrrk XP_021293472.1 171 CCQVYGCNKDLSSSKDYHKRHKVCEAHSKTAKVIVNGIEQRFCQQCSRFHALAEFDDGKRSCRKRLAGHNERRRKL 246 6*************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence
MESWSYGSEG KGLLFTDEMD LPVDAFARSR KALIGWDLKP STDFEAVESM EFMDFGFADM 60 NKKPFYGNTS MGIFGAEFGN GCAKRVVSPT CMVTSSSYYG EEESGSKHSS SLMESNSQES 120 SLIDLKLGRL TDRRDGQDGK FLKETSVVSS VRPAFMAKKA RTTSSYSHAP CCQVYGCNKD 180 LSSSKDYHKR HKVCEAHSKT AKVIVNGIEQ RFCQQCSRFH ALAEFDDGKR SCRKRLAGHN 240 ERRRKLHFNT LSGKPHKLLQ SYQGTKFLGT SIPKRMPFVI PNIFQGDFVY PERYEQANQS 300 QQVKSEEKPI YNPQSATPIT NCQLRPKSIF HMQGSGKQYV PGTFSSSTEG FNAPNAASTV 360 KVSSGLSRSD CALSLLSAQS QDLSNHAAGI QMTRPLINHA GHAYHSFEKS AGMSSLEKAN 420 GFYSCGMKPM GAGQVGVAVV SDAGHNANFA VQGDGYFQDS DLLSARYFLS PENGTTVDLL 480 QLSTHLQRVE RHRNSMHVKL ENEDLCYFLT T

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence

MESWSYGSEG KGLLFTDEMD LPVDAFARSR KALIGWDLKP STDFEAVESM EFMDFGFADM  60
NKKPFYGNTS MGIFGAEFGN GCAKRVVSPT CMVTSSSYYG EEESGSKHSS SLMESNSQES  120
SLIDLKLGRL TDRRDGQDGK FLKETSVVSS VRPAFMAKKA RTTSSYSHAP CCQVYGCNKD  180
LSSSKDYHKR HKVCEAHSKT AKVIVNGIEQ RFCQQCSRFH ALAEFDDGKR SCRKRLAGHN  240
ERRRKLHFNT LSGKPHKLLQ SYQGTKFLGT SIPKRMPFVI PNIFQGDFVY PERYEQANQS  300
QQVKSEEKPI YNPQSATPIT NCQLRPKSIF HMQGSGKQYV PGTFSSSTEG FNAPNAASTV  360
KVSSGLSRSD CALSLLSAQS QDLSNHAAGI QMTRPLINHA GHAYHSFEKS AGMSSLEKAN  420
GFYSCGMKPM GAGQVGVAVV SDAGHNANFA VQGDGYFQDS DLLSARYFLS PENGTTVDLL  480
QLSTHLQRVE RHRNSMHVKL ENEDLCYFLT T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	3e-54	SBP family protein