PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021293471.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

SBP

Protein Properties

Length: 528aa MW: 58569.1 Da PI: 8.7654

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021293471.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.6	1.1e-40	188	263	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv gC++dls+ k+yh+rhkvCe+hsk+++v+v+g+eqrfCqqCsrfh+l efD++krsCr+rLa+hnerrrk XP_021293471.1 188 CCQVYGCNKDLSSSKDYHKRHKVCEAHSKTAKVIVNGIEQRFCQQCSRFHALAEFDDGKRSCRKRLAGHNERRRKL 263 6*************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence
MGKLRNMREA AFILFILMES WSYGSEGKGL LFTDEMDLPV DAFARSRKAL IGWDLKPSTD 60 FEAVESMEFM DFGFADMNKK PFYGNTSMGI FGAEFGNGCA KRVVSPTCMV TSSSYYGEEE 120 SGSKHSSSLM ESNSQESSLI DLKLGRLTDR RDGQDGKFLK ETSVVSSVRP AFMAKKARTT 180 SSYSHAPCCQ VYGCNKDLSS SKDYHKRHKV CEAHSKTAKV IVNGIEQRFC QQCSRFHALA 240 EFDDGKRSCR KRLAGHNERR RKLHFNTLSG KPHKLLQSYQ GTKFLGTSIP KRMPFVIPNI 300 FQGDFVYPER YEQANQSQQV KSEEKPIYNP QSATPITNCQ LRPKSIFHMQ GSGKQYVPGT 360 FSSSTEGFNA PNAASTVKVS SGLSRSDCAL SLLSAQSQDL SNHAAGIQMT RPLINHAGHA 420 YHSFEKSAGM SSLEKANGFY SCGMKPMGAG QVGVAVVSDA GHNANFAVQG DGYFQDSDLL 480 SARYFLSPEN GTTVDLLQLS THLQRVERHR NSMHVKLENE DLCYFLTT

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence

MGKLRNMREA AFILFILMES WSYGSEGKGL LFTDEMDLPV DAFARSRKAL IGWDLKPSTD  60
FEAVESMEFM DFGFADMNKK PFYGNTSMGI FGAEFGNGCA KRVVSPTCMV TSSSYYGEEE  120
SGSKHSSSLM ESNSQESSLI DLKLGRLTDR RDGQDGKFLK ETSVVSSVRP AFMAKKARTT  180
SSYSHAPCCQ VYGCNKDLSS SKDYHKRHKV CEAHSKTAKV IVNGIEQRFC QQCSRFHALA  240
EFDDGKRSCR KRLAGHNERR RKLHFNTLSG KPHKLLQSYQ GTKFLGTSIP KRMPFVIPNI  300
FQGDFVYPER YEQANQSQQV KSEEKPIYNP QSATPITNCQ LRPKSIFHMQ GSGKQYVPGT  360
FSSSTEGFNA PNAASTVKVS SGLSRSDCAL SLLSAQSQDL SNHAAGIQMT RPLINHAGHA  420
YHSFEKSAGM SSLEKANGFY SCGMKPMGAG QVGVAVVSDA GHNANFAVQG DGYFQDSDLL  480
SARYFLSPEN GTTVDLLQLS THLQRVERHR NSMHVKLENE DLCYFLTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	4e-54	SBP family protein