PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021293284.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | YABBY | ||||||||
Protein Properties | Length: 170aa MW: 18788.5 Da PI: 8.9631 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 145.8 | 4.5e-45 | 9 | 154 | 1 | 163 |
YABBY 1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 +d++ +se++Cyv+CnfCnt+lav +P + l+ +vtv+CGhC++l ++ + q + l ++ l++ +++++ + XP_021293284.1 9 MDLVPQSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPLQGQ--------CLDPQTSLSLQSFCSDFRKVQ--------- 86 578899*************************************97553332222222........222333333333333333332......... PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163 +s + s++++ ++p++p v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknWa + XP_021293284.1 87 SPSPSSSTSSEPSSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY 154 222223445567899999************************************************76 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence |
MNLEEKVGMD LVPQSEHLCY VRCNFCNTVL AVGIPCKRLL DTVTVKCGHC SNLSFLSTRP 60 PLQGQCLDPQ TSLSLQSFCS DFRKVQSPSP SSSTSSEPSS PKAPFVVKPP EKKHRLPSAY 120 NRFMKEEIQR IKAANPEIPH REAFSAAAKN WARYIPNSPA APVSGSRNNE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69180.1 | 1e-71 | YABBY family protein |