PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021292546.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

CO-like

Protein Properties

Length: 426aa MW: 47716.3 Da PI: 5.038

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021292546.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25.9	2.1e-08	11	52	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +r C+ + +k+++++C ++ +lC+ C ++ H+ H+ XP_021292546.1 11 ARACDGCLRKRARWYCAADDAFLCQGCDTSVHSAnqlasrHE 52 578*****************************6566666666 PP
2	CCT	67.2	4.5e-23	372	415	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY++Kr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ XP_021292546.1 372 REARVSRYRDKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 415 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MQANAMGGKT ARACDGCLRK RARWYCAADD AFLCQGCDTS VHSANQLASR HERARLETAS 60 FSKFSASVMN RTNQDAPPAW HQGFTRKART PRQNKSMLGQ QKNEGKVFSL NPLDPVVPEI 120 GIEDGSVDEN EEQRLCRVPV LDPFAAELCN MVTSDGDEVA MVNEDGNFVI DDYERERTCE 180 LDDGLHGFLP SDMDLADFAA DVESLLGVGL DDDACCDTKG IDLLHSKGED ESNVLHERKI 240 VKVKDEGELE GITACCFDSA FDVTRESLNW SFDYESRTIG EEEEEKVLPV TETTTMNGEI 300 KAEMKRNMLL RLNYESVITA WASQGSPWTA GSRPEFNPDD FMGSNLKEGH HLSGGIGGIY 360 SLQGRGNTDG EREARVSRYR DKRRTRLFSK KIRYEVRKLN AEKRPRMKGR FVKRSSFVGT 420 AFPYIN

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MQANAMGGKT ARACDGCLRK RARWYCAADD AFLCQGCDTS VHSANQLASR HERARLETAS  60
FSKFSASVMN RTNQDAPPAW HQGFTRKART PRQNKSMLGQ QKNEGKVFSL NPLDPVVPEI  120
GIEDGSVDEN EEQRLCRVPV LDPFAAELCN MVTSDGDEVA MVNEDGNFVI DDYERERTCE  180
LDDGLHGFLP SDMDLADFAA DVESLLGVGL DDDACCDTKG IDLLHSKGED ESNVLHERKI  240
VKVKDEGELE GITACCFDSA FDVTRESLNW SFDYESRTIG EEEEEKVLPV TETTTMNGEI  300
KAEMKRNMLL RLNYESVITA WASQGSPWTA GSRPEFNPDD FMGSNLKEGH HLSGGIGGIY  360
SLQGRGNTDG EREARVSRYR DKRRTRLFSK KIRYEVRKLN AEKRPRMKGR FVKRSSFVGT  420
AFPYIN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	383	399	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	2e-99	CO-like family protein