PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021292463.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 438aa MW: 49263.5 Da PI: 8.8497

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021292463.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5.1e-06	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_021292463.1 56 YVCEICNQGFQRDQNLQMHRRRH 78 9*********************9 PP
2	zf-C2H2	16.1	3.2e-05	133	155	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ XP_021292463.1 133 WVCEKCSKGYAVQSDYKAHLKTC 155 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence
MLANNSCSSV PSSEPFSCIE NGNNNNKRKR RPAGTPDPDA EVVSLSPKTL LESDRYVCEI 60 CNQGFQRDQN LQMHRRRHKV PWKLLKRETP VVRKRVFVCP EPSCLHHDPC HALGDLVGIK 120 KHFRRKHSNH KQWVCEKCSK GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDA 180 CHMGRIRPES QALQPACLSR TASSPSPSSD TNFSTAPWPS LVLAKTTDTM FLRPTKDNSP 240 KNAHYHNLEL QLLTTSNPTE LFVSPKTDDR HSTQLQLSIG SSDIGEKIES TVTCTNKDSS 300 KKSPHQESEK PAFVASRLKE QAREQLRLAM AEKAFAEEAR QQAKRQIELA EQEFANAKRI 360 RQQAQAELDK AQALKDHAIK QINSTILQIT CHACKQQFQA RTPPEENSLV GSYISSAITE 420 GEAENDYIRT NLPKATNT

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence

MLANNSCSSV PSSEPFSCIE NGNNNNKRKR RPAGTPDPDA EVVSLSPKTL LESDRYVCEI  60
CNQGFQRDQN LQMHRRRHKV PWKLLKRETP VVRKRVFVCP EPSCLHHDPC HALGDLVGIK  120
KHFRRKHSNH KQWVCEKCSK GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDA  180
CHMGRIRPES QALQPACLSR TASSPSPSSD TNFSTAPWPS LVLAKTTDTM FLRPTKDNSP  240
KNAHYHNLEL QLLTTSNPTE LFVSPKTDDR HSTQLQLSIG SSDIGEKIES TVTCTNKDSS  300
KKSPHQESEK PAFVASRLKE QAREQLRLAM AEKAFAEEAR QQAKRQIELA EQEFANAKRI  360
RQQAQAELDK AQALKDHAIK QINSTILQIT CHACKQQFQA RTPPEENSLV GSYISSAITE  420
GEAENDYIRT NLPKATNT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	27	32	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-149	C2H2 family protein