PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021292224.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

FAR1

Protein Properties

Length: 882aa MW: 101526 Da PI: 7.1598

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021292224.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.5	8.1e-27	89	191	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 +fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+ +++ +r+ ++t+Cka+++vk++ dgkw+v+++++ XP_021292224.1 89 SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSfnrprarqskqdPDSTTGRRSCSKTDCKASMHVKRRPDGKWVVHSFVK 183 5*****************************************9999999987766554455559999********************** PP FAR1 84 eHnHelap 91 eHnHel p XP_021292224.1 184 EHNHELLP 191 ***975 PP

Sequence ? help Back to Top
Protein Sequence Length: 882 aa Download sequence
MDIDLRLPSG EQCKEDEEAN GIDNILDGDE KLHNGVVEAG NIAHVGEDVR PEDGVEMNSS 60 AVDMVTFKED TNLEPLSGME FESHGEAYSF YQEYARSMGF NTAIQNSRRS KTSREFIDAK 120 FACSRYGTKR EYDKSFNRPR ARQSKQDPDS TTGRRSCSKT DCKASMHVKR RPDGKWVVHS 180 FVKEHNHELL PAQAVSEQTR RMYAAMARQF AEYKNVVGLK NDPKNPFDKG RNLALEAGDV 240 KILLEFFTHM QNINSNFFYA IDLGEDQRLK SLFWVDAKSR HDYSYFCDVV SFDTAYVRNK 300 YKMPLALFIG VNHHYQFMPL GCALVSDESA ATFSWLMQTW LKAMGGQSPR VIITDQDRIV 360 KSVVAEIFPN TYHCFFLWHV LGKVSENLGH VIKQHGNFMA KFEKCIYRSW TEEEFAKRWW 420 KILDRFGLKD DEWMKSLYED RRKWVPTYIM DVLLAGMSMV QRSESVNSFF DKYVHKKTTV 480 QEFLKQYEAI LQDRYEEEAK ANFDSWSKVP TLKSPSPFEK SVAGLYTHTV FKKFQVEVVG 540 AIACHPKPEN HDATSSSFRV QDLEKNQDFV VTLNEMKSEV SCICRLYEYK GYLCRHAMVV 600 LQINGHSTIP SQYILKRWTK EAKSRHFMGD ESEQVQSRVQ RYNDLFQRAM KLIEEGSLSQ 660 ESYYIAFRSL EEAFGNCLSA NTSNKSLAEA VTSPTQGMIC IEEDNQSRST SKTNKKKNPT 720 KKRKVNYYSY WHVDIFLQIL YPVLNGSFVL FLFLYFVCVL FLQGNSEQEV MTVPVTDGLQ 780 QMDKLSSRSV ALDGYFGAQP SVQGMVQLNL MAPRDNYYGN QQTIQGLGQL NTIAASHDGY 840 YGPQQTMPGM GQMDFFRTPG FYIRDDPNVR AAQLHDDASR HA

Sequence ? help Back to Top

Protein Sequence Length: 882 aa Download sequence

MDIDLRLPSG EQCKEDEEAN GIDNILDGDE KLHNGVVEAG NIAHVGEDVR PEDGVEMNSS  60
AVDMVTFKED TNLEPLSGME FESHGEAYSF YQEYARSMGF NTAIQNSRRS KTSREFIDAK  120
FACSRYGTKR EYDKSFNRPR ARQSKQDPDS TTGRRSCSKT DCKASMHVKR RPDGKWVVHS  180
FVKEHNHELL PAQAVSEQTR RMYAAMARQF AEYKNVVGLK NDPKNPFDKG RNLALEAGDV  240
KILLEFFTHM QNINSNFFYA IDLGEDQRLK SLFWVDAKSR HDYSYFCDVV SFDTAYVRNK  300
YKMPLALFIG VNHHYQFMPL GCALVSDESA ATFSWLMQTW LKAMGGQSPR VIITDQDRIV  360
KSVVAEIFPN TYHCFFLWHV LGKVSENLGH VIKQHGNFMA KFEKCIYRSW TEEEFAKRWW  420
KILDRFGLKD DEWMKSLYED RRKWVPTYIM DVLLAGMSMV QRSESVNSFF DKYVHKKTTV  480
QEFLKQYEAI LQDRYEEEAK ANFDSWSKVP TLKSPSPFEK SVAGLYTHTV FKKFQVEVVG  540
AIACHPKPEN HDATSSSFRV QDLEKNQDFV VTLNEMKSEV SCICRLYEYK GYLCRHAMVV  600
LQINGHSTIP SQYILKRWTK EAKSRHFMGD ESEQVQSRVQ RYNDLFQRAM KLIEEGSLSQ  660
ESYYIAFRSL EEAFGNCLSA NTSNKSLAEA VTSPTQGMIC IEEDNQSRST SKTNKKKNPT  720
KKRKVNYYSY WHVDIFLQIL YPVLNGSFVL FLFLYFVCVL FLQGNSEQEV MTVPVTDGLQ  780
QMDKLSSRSV ALDGYFGAQP SVQGMVQLNL MAPRDNYYGN QQTIQGLGQL NTIAASHDGY  840
YGPQQTMPGM GQMDFFRTPG FYIRDDPNVR AAQLHDDASR HA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	0.0	FAR1 family protein