PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021291062.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

SBP

Protein Properties

Length: 237aa MW: 26200.6 Da PI: 8.6351

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021291062.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.1	1.8e-41	114	191	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+e+C+adls+ak+yhrrhkvCe+hska+v+lv+gl+qrfCqqCsrfh lsefDe+krsCrrrLa+hnerrrk+++ XP_021291062.1 114 CCQAENCTADLSDAKQYHRRHKVCEHHSKAQVALVAGLRQRFCQQCSRFHVLSEFDEAKRSCRRRLAGHNERRRKNST 191 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MELVVLTHSL CLSSFYLPIL LGSPSPSFSL FCSFHSLHTD STCMEARGKQ KMGKVVKREA 60 DMESDDDGSE LQFGGSMEDD DKKRKDVIVL GGSGAAAAGG SGRKGLTGAG AMRCCQAENC 120 TADLSDAKQY HRRHKVCEHH SKAQVALVAG LRQRFCQQCS RFHVLSEFDE AKRSCRRRLA 180 GHNERRRKNS TESHGEGSGR KGTGTQLKDM ICGQVDERGR IKLTIQETST YEHFQIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.1	3e-48	SBP family protein