PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021290827.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

SBP

Protein Properties

Length: 310aa MW: 33883.5 Da PI: 8.6344

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021290827.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.8	5.8e-42	24	100	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls++++yhrrhkvCevhsk+p+v+++g+eqrfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+q+ XP_021290827.1 24 CLVDGCTADLSKCRDYHRRHKVCEVHSKTPKVTIRGQEQRFCQQCSRFHSLVEFDEGKRSCRKRLDGHNRRRRKPQP 100 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence
MESSSAASFK RARAPGSGNQ VPSCLVDGCT ADLSKCRDYH RRHKVCEVHS KTPKVTIRGQ 60 EQRFCQQCSR FHSLVEFDEG KRSCRKRLDG HNRRRRKPQP DSLSVNSGRF LSNHQGARYL 120 PFCNHQIFST TAVTSSWVGS VKMETDIKSE LNFSSRNSLF PGSSSQNYKE EKHFSFLQST 180 SLSLPGVSVC QPFLDANPSS GNGSSSRKMF SNGLNQVINS NCALSLLSSQ PAETGEIGLS 240 PCPMVQSGPA SSLNQNLQYN DLGMEGEQVG SILASDGSSN TNFHGNEMFQ TGHPGSSSSG 300 THHTLSFSWE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	98	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	7e-51	SBP family protein