PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021290505.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

WRKY

Protein Properties

Length: 433aa MW: 46815 Da PI: 5.8148

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021290505.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.1	2.5e-30	221	279	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers+ dp+++++tY+g+H+h+ XP_021290505.1 221 SDPWAWRKYGQKPIKGSPYPRNYYRCSSSkGCAARKQVERSNFDPNIFIVTYTGDHTHP 279 699**********************998**************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
MAEDWDLYAV VRSCSSAANT TATASNDFTN ENGSSWREDP LACLASLKFE EEDDLFSFPN 60 LSQLRKSGSL QDSYKPFLPY ADPTTTSTNQ GIDPSSSSSV PGGSSGQHHQ HQRLKQQQEK 120 PTTTSIGISP PLTPTSAPIF AFGQSGNQQP PQHVQEQPQP QQQNPLDRQQ QLQQRVQQQE 180 GQRPAAILPL RNMNSQAPRS RKRKNQQKRT VCHVTADNLS SDPWAWRKYG QKPIKGSPYP 240 RNYYRCSSSK GCAARKQVER SNFDPNIFIV TYTGDHTHPR PTHRNSLAGS TRNKPATIQK 300 AASKDSAQEA LPSASCSSPR SPTSLSPISP TTPLSAPEDA AAPQHNTDDI NGGEEESVDM 360 TLETALDRES NEDDDLLIPN AHVDEDLFKG LEELVGGADA GSTSSGLGSS PSFGDNFPPW 420 GTGNSTAAAG GGC

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

MAEDWDLYAV VRSCSSAANT TATASNDFTN ENGSSWREDP LACLASLKFE EEDDLFSFPN  60
LSQLRKSGSL QDSYKPFLPY ADPTTTSTNQ GIDPSSSSSV PGGSSGQHHQ HQRLKQQQEK  120
PTTTSIGISP PLTPTSAPIF AFGQSGNQQP PQHVQEQPQP QQQNPLDRQQ QLQQRVQQQE  180
GQRPAAILPL RNMNSQAPRS RKRKNQQKRT VCHVTADNLS SDPWAWRKYG QKPIKGSPYP  240
RNYYRCSSSK GCAARKQVER SNFDPNIFIV TYTGDHTHPR PTHRNSLAGS TRNKPATIQK  300
AASKDSAQEA LPSASCSSPR SPTSLSPISP TTPLSAPEDA AAPQHNTDDI NGGEEESVDM  360
TLETALDRES NEDDDLLIPN AHVDEDLFKG LEELVGGADA GSTSSGLGSS PSFGDNFPPW  420
GTGNSTAAAG GGC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	2e-60	WRKY family protein