PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021290420.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

SBP

Protein Properties

Length: 807aa MW: 91177.9 Da PI: 7.2507

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021290420.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	119.3	1.9e-37	139	214	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv+gCead+se+k yhrrh+vC ++++++vl++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k XP_021290420.1 139 RCQVPGCEADISELKGYHRRHRVCLRCANSSTVLIDGETKRYCQQCGKFHLLSDFDEGKRSCRRKLERHNNRRRRK 214 6************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 807 aa Download sequence
MERAPSPPTT QTPRGSRRSK DPEMDVHVGV NEADPTSSVW DWGDLLDFTV DDHFSISFDD 60 ENLSPSPVEA PAPDSDPVPG PDRVRKRDPR LTCSNFLAGR VPCSCPEIDE QIEKLEEEEA 120 GAPGKKRART GRIGSGTCRC QVPGCEADIS ELKGYHRRHR VCLRCANSST VLIDGETKRY 180 CQQCGKFHLL SDFDEGKRSC RRKLERHNNR RRRKPVGSKT VANNESQGAV RSEDVACGGE 240 EGKDGSSLSG QIAEEEAAFE SEDGHGSTHC SARMLQSVNN DSVVTLIDTE MDRRKDDSKF 300 SLSTSYCDNK TAYSSMCPTG RISFKLYDWN PAEFPRRLRH QIFQWLANMP VELEGYIRPG 360 CIILTVFISM PKNMWNKLSE NPMTYMYDFV FTPGRMLYGR GFMTIYLNDM IFRTRKDGTS 420 MVKIDMEMQA PRLHYVHPAC FEAGKPMEFV ACGSNLLQPK FRFLVSFAGR YLAYDYCVAS 480 SHVQSKEDSP SCDHQLYKIH VPRTEPDLFG PAFIEVENQS GLSNFIPVLI GDKEVCSEMK 540 SIQKRFDASL FRGGSKMSAT GSLFEACEAS SLRQRTYSEL VLDIAWLLRE PKLENFQEMI 600 PSSQIQRFNC LLSFLIHNES TVILKKVLQN LKIVVEKTGF NGANDSDIRL FQKHMDYARD 660 ILIIKLQKGE SPVLLSEYIE RERNWCLQSS FKDDELSVVP NALQDLEGRT NGKLRAMMAS 720 TSFTRSETLP LLKREIIMNV NLRKECPRKS CSPIFATTTL RSRPAVLVLA AAALCLGMCA 780 IFFHPNKVGE FAVTIRRCLF DRVVDVE

Sequence ? help Back to Top

Protein Sequence Length: 807 aa Download sequence

MERAPSPPTT QTPRGSRRSK DPEMDVHVGV NEADPTSSVW DWGDLLDFTV DDHFSISFDD  60
ENLSPSPVEA PAPDSDPVPG PDRVRKRDPR LTCSNFLAGR VPCSCPEIDE QIEKLEEEEA  120
GAPGKKRART GRIGSGTCRC QVPGCEADIS ELKGYHRRHR VCLRCANSST VLIDGETKRY  180
CQQCGKFHLL SDFDEGKRSC RRKLERHNNR RRRKPVGSKT VANNESQGAV RSEDVACGGE  240
EGKDGSSLSG QIAEEEAAFE SEDGHGSTHC SARMLQSVNN DSVVTLIDTE MDRRKDDSKF  300
SLSTSYCDNK TAYSSMCPTG RISFKLYDWN PAEFPRRLRH QIFQWLANMP VELEGYIRPG  360
CIILTVFISM PKNMWNKLSE NPMTYMYDFV FTPGRMLYGR GFMTIYLNDM IFRTRKDGTS  420
MVKIDMEMQA PRLHYVHPAC FEAGKPMEFV ACGSNLLQPK FRFLVSFAGR YLAYDYCVAS  480
SHVQSKEDSP SCDHQLYKIH VPRTEPDLFG PAFIEVENQS GLSNFIPVLI GDKEVCSEMK  540
SIQKRFDASL FRGGSKMSAT GSLFEACEAS SLRQRTYSEL VLDIAWLLRE PKLENFQEMI  600
PSSQIQRFNC LLSFLIHNES TVILKKVLQN LKIVVEKTGF NGANDSDIRL FQKHMDYARD  660
ILIIKLQKGE SPVLLSEYIE RERNWCLQSS FKDDELSVVP NALQDLEGRT NGKLRAMMAS  720
TSFTRSETLP LLKREIIMNV NLRKECPRKS CSPIFATTTL RSRPAVLVLA AAALCLGMCA  780
IFFHPNKVGE FAVTIRRCLF DRVVDVE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	213	RRKLERHNNRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.1	0.0	SBP family protein