PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021290402.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | C3H | ||||||||
Protein Properties | Length: 473aa MW: 49532.5 Da PI: 7.7447 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.4 | 4.1e-12 | 44 | 68 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C yG+rC+F+H++ XP_021290402.1 44 EADCIYYLRTGFCGYGSRCRFNHPR 68 789********************96 PP | |||||||
2 | zf-CCCH | 38.8 | 1.6e-12 | 90 | 114 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G +Ck++H++ XP_021290402.1 90 QPVCQYYMRTGTCKFGVSCKYHHPK 114 689********************96 PP | |||||||
3 | zf-CCCH | 35.5 | 1.7e-11 | 135 | 159 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++ +tG+Ck+G++CkF+H+ XP_021290402.1 135 GEKECSYYVKTGQCKFGASCKFHHP 159 7899********************8 PP | |||||||
4 | zf-CCCH | 38.7 | 1.6e-12 | 296 | 322 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G++C+++H+p XP_021290402.1 296 PGQPECQYYMKTGDCKFGSSCRYHHPP 322 5789*********************97 PP | |||||||
5 | zf-CCCH | 34 | 5e-11 | 344 | 367 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C+++++ G Ck+G+ CkF H+ XP_021290402.1 344 APPCSHYSQRGVCKFGAACKFDHP 367 689********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence |
MERGPESDPQ PEWTAPGPET GLEEPVWRLG LGGGPESYPE RPEEADCIYY LRTGFCGYGS 60 RCRFNHPRDR AAVMGAGRGG VGEYPERVGQ PVCQYYMRTG TCKFGVSCKY HHPKQGGGSV 120 SPVLLNYYGY PLRPGEKECS YYVKTGQCKF GASCKFHHPA PPAAQVPAPS PAPPVASVPT 180 PVPAPALYST VQSPSGPSSQ QYGVVMARPP LMPGSYMQSP YGPLLLPPGM VSVPSWNPYM 240 APVSPGTQPT VGSSSIFGVT PLSPSAPAYT GPYQPVPTSV GPSSSSQKEQ SFPERPGQPE 300 CQYYMKTGDC KFGSSCRYHH PPEVIAPKPD VILGPLGLPL RPGAPPCSHY SQRGVCKFGA 360 ACKFDHPTGT LSYSPSASSL ADMPVAPYPV GSTIGTLAPS SSSSELRPDL ISGSSKDPAT 420 AVMSSSVSTL SESVGSVFSE GAPIPQSSIQ QSSQSSSSST GSGSSSTEGR TSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 1e-133 | C3H family protein |