PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021290234.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

SBP

Protein Properties

Length: 1032aa MW: 114694 Da PI: 8.0109

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021290234.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.4	1.3e-40	148	225	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC++hska ++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ XP_021290234.1 148 VCQVEDCRADLSNAKDYHRRHKVCDMHSKAGKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 225 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1032 aa Download sequence
MDAKFGGKPH HVYGPMVSDL KSVEKKSVEW DLNDWKWDGD LFTATPLNSV PLDCRSRQLF 60 PVGPETPANA GSSHTSSSCS EHNNPGNEKG KREVEKRRRV VVGEDEEVNA DSASLNLKLG 120 GQIYPIMDDD AKCGKKTKVT GAASSRAVCQ VEDCRADLSN AKDYHRRHKV CDMHSKAGKA 180 LVGNVMQRFC QQCSRFHVLQ EFDEGKRSCR RRLAGHNRRR RKTHPDNVAT AGSLNDERSS 240 SYLLISLLRI LSNMHSNSSD QTKDRDLLSH LLRSLASLGG SIDGRNISGL LQGSQGVLNA 300 ARSVGNLEKV TDVVSNGSEH ARPSGSGSKI DDPANIPDWQ GSMGHCGTLP AANVAQRRSA 360 NNDVQDGCLS GSPFKMPIPS GGSLPFRANA SEATVGRFRM NNIDLNNVYD DSQDYVENLE 420 RSLVLKNPVN ESLHSSVRVP ESHRSSPPQL SGNSDSTSSQ SPSTSSGEAQ SRTDRIVFKL 480 FGKEPNGFPI ALRRQILDWL SHSPTDIESY IRPGCVILTI YLRLRESAWE ELRFDLGSSL 540 RRLVDVSNDS FWKTGWVYAR VRHSIAFIYN GQVLLDTPLP LKSHKCCRIS SIKPIAVSIT 600 ERVQFIVKGF NLNRSSTRLL CAIEGKYLVQ ETCYDLMQVI DPVNGQDELQ SLCFLCSIPN 660 VSGRGFIEVE DHGLSSTFFP FIVAEQEVCS EICTLEGVIE TAVPTVDINK NAEKMESKNQ 720 ALDFMHEMGW LLHRNHLHWR LGHLNPNSNL FPFRRFKWLM EFSMDHEWCA VVKKLLGILF 780 DGTVDLGDHS SIEFALLDMC LLHKAVQRNC RPMVELLLRY VPDKVLDKPG SEHKPLVDVN 840 YDGFIFKPNV AGPAGLTPLH VAASNEGSEN VLDALTDDPG LVAIEAWKSA RDSTGLTPND 900 YACLRGHYSY IHLVQRKINK KSECGHVVLD ISGTRLDCNS QQKLSDGTRL AKASSLETEK 960 IKMKARHQCC RACEHKLTYG NSRTALVYRP AMLSMVAIAA VCVCVALLFK SSPEVLYVFR 1020 PFRWELLKYG SS

Sequence ? help Back to Top

Protein Sequence Length: 1032 aa Download sequence

MDAKFGGKPH HVYGPMVSDL KSVEKKSVEW DLNDWKWDGD LFTATPLNSV PLDCRSRQLF  60
PVGPETPANA GSSHTSSSCS EHNNPGNEKG KREVEKRRRV VVGEDEEVNA DSASLNLKLG  120
GQIYPIMDDD AKCGKKTKVT GAASSRAVCQ VEDCRADLSN AKDYHRRHKV CDMHSKAGKA  180
LVGNVMQRFC QQCSRFHVLQ EFDEGKRSCR RRLAGHNRRR RKTHPDNVAT AGSLNDERSS  240
SYLLISLLRI LSNMHSNSSD QTKDRDLLSH LLRSLASLGG SIDGRNISGL LQGSQGVLNA  300
ARSVGNLEKV TDVVSNGSEH ARPSGSGSKI DDPANIPDWQ GSMGHCGTLP AANVAQRRSA  360
NNDVQDGCLS GSPFKMPIPS GGSLPFRANA SEATVGRFRM NNIDLNNVYD DSQDYVENLE  420
RSLVLKNPVN ESLHSSVRVP ESHRSSPPQL SGNSDSTSSQ SPSTSSGEAQ SRTDRIVFKL  480
FGKEPNGFPI ALRRQILDWL SHSPTDIESY IRPGCVILTI YLRLRESAWE ELRFDLGSSL  540
RRLVDVSNDS FWKTGWVYAR VRHSIAFIYN GQVLLDTPLP LKSHKCCRIS SIKPIAVSIT  600
ERVQFIVKGF NLNRSSTRLL CAIEGKYLVQ ETCYDLMQVI DPVNGQDELQ SLCFLCSIPN  660
VSGRGFIEVE DHGLSSTFFP FIVAEQEVCS EICTLEGVIE TAVPTVDINK NAEKMESKNQ  720
ALDFMHEMGW LLHRNHLHWR LGHLNPNSNL FPFRRFKWLM EFSMDHEWCA VVKKLLGILF  780
DGTVDLGDHS SIEFALLDMC LLHKAVQRNC RPMVELLLRY VPDKVLDKPG SEHKPLVDVN  840
YDGFIFKPNV AGPAGLTPLH VAASNEGSEN VLDALTDDPG LVAIEAWKSA RDSTGLTPND  900
YACLRGHYSY IHLVQRKINK KSECGHVVLD ISGTRLDCNS QQKLSDGTRL AKASSLETEK  960
IKMKARHQCC RACEHKLTYG NSRTALVYRP AMLSMVAIAA VCVCVALLFK SSPEVLYVFR  1020
PFRWELLKYG SS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	100	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	SBP family protein