PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021290063.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

WRKY

Protein Properties

Length: 579aa MW: 63153.9 Da PI: 7.1015

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021290063.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.3	3.3e-33	249	307	1	60
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 ++DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers d++++ei+Y+g+Hnh+k XP_021290063.1 249 VQDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGSHNHPK 307 58**************************************.*************85 PP
2	WRKY	104.5	5.8e-33	412	470	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++d ++v++tYeg+Hnh+ XP_021290063.1 412 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTIGCPVRKHVERASHDLRAVITTYEGKHNHD 470 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence
MASSSGTNTS NTSSINSQAA FHFSSSNPMA ASSSFMMDNI NQNRSTSMTS WGLSDHQATD 60 KFGIEIPKFK SLAPSSLPIS PAPVSPSSYL ATPPAAFSPT DFLGSPVLFS TSSIFPSPTT 120 GAFASQTLNW RSNSNDNQQG IKGEHNNFFD FSFQPQPRPS STSSSTFQSS SNIVSVEQST 180 WNFSEPMKQP GLPVEKAAGV KSEFAPMQNF SSEMAPLQTT MQQSNTDSQP AAYSQYNQST 240 QYPRENRKVQ DGYNWRKYGQ KQVKGSENPR SYYKCTYPNC PTKKKVERSL DGQITEIVYK 300 GSHNHPKPQS TRRSSSHSAC TNSEISDQSG GTLGNERTDS FLVHEDTSGS IGEDEFDQAS 360 PISNPGGDDN ENEPDAKRWK GENENEGIIG SGSRTVREPR IVVQTTSDID ILDDGYRWRK 420 YGQKVVKGNP NPRSYYKCTT IGCPVRKHVE RASHDLRAVI TTYEGKHNHD VPAARGSGYA 480 INRASTTNNS NAPMPIRPSA VPGQASNTSY PNSLQTRLPT SGSQPPVTLE MLQNQGGYGF 540 SGFGKAIGSY MSQAQFSEGA FARAKDEPED DSFFDGFLS

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence

MASSSGTNTS NTSSINSQAA FHFSSSNPMA ASSSFMMDNI NQNRSTSMTS WGLSDHQATD  60
KFGIEIPKFK SLAPSSLPIS PAPVSPSSYL ATPPAAFSPT DFLGSPVLFS TSSIFPSPTT  120
GAFASQTLNW RSNSNDNQQG IKGEHNNFFD FSFQPQPRPS STSSSTFQSS SNIVSVEQST  180
WNFSEPMKQP GLPVEKAAGV KSEFAPMQNF SSEMAPLQTT MQQSNTDSQP AAYSQYNQST  240
QYPRENRKVQ DGYNWRKYGQ KQVKGSENPR SYYKCTYPNC PTKKKVERSL DGQITEIVYK  300
GSHNHPKPQS TRRSSSHSAC TNSEISDQSG GTLGNERTDS FLVHEDTSGS IGEDEFDQAS  360
PISNPGGDDN ENEPDAKRWK GENENEGIIG SGSRTVREPR IVVQTTSDID ILDDGYRWRK  420
YGQKVVKGNP NPRSYYKCTT IGCPVRKHVE RASHDLRAVI TTYEGKHNHD VPAARGSGYA  480
INRASTTNNS NAPMPIRPSA VPGQASNTSY PNSLQTRLPT SGSQPPVTLE MLQNQGGYGF  540
SGFGKAIGSY MSQAQFSEGA FARAKDEPED DSFFDGFLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	1e-133	WRKY family protein