PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021289966.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 755aa    MW: 85183.9 Da    PI: 6.3254
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021289966.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3881.1e-1183827531374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+av+++d + a++lL++++++ sp gd +qRla++f+ +L+arla+++s++yk l +++ts    s+ l+a+ l++ ++P+ k+sh
  XP_021289966.1 382 LRTLLIHCAQAVAADDRRSANELLKQIRQHTSPFGDGNQRLAHCFADGLEARLAGTGSQIYKGLVSKRTS---ASDILKAYLLYVAACPFRKVSH 473
                     6789************************************************************999999...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +++N++I  a  ++ ++H+iDf+i +G+QWp+L++ L+ R+egpp+lRiTg++ p++g   +e++eetg+rLa +A+e++vpf++n+ +ak++++
  XP_021289966.1 474 FICNKTINVASRKSMKLHVIDFGILYGFQWPTLIERLSLRSEGPPKLRITGIDFPQPGfrPAERVEETGRRLAAYAKEFKVPFQYNA-IAKKWDN 567
                     *********************************************************9*****************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++eeL+++++E ++Vn+ ++ ++llde+v+++s+r+ vL+l ++++P+++++   +  +n++ F++rf eal ++s++fd+le+ +pre+ er+
  XP_021289966.1 568 IRVEELDIHEDEFVVVNCLYRAKNLLDETVAVDSPRNIVLNLARKINPNIFIHGIMNGAYNAPFFVTRFREALFHFSSMFDMLETIVPREDWERV 662
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +E+e+lgre+ nv+aceg er+er et+++W++r  +aGF +vp++ +++k a   +r  + + + ++e+  +l++gWk+r ++++SaW+
  XP_021289966.1 663 LIEKEILGREALNVIACEGWERVERPETFKQWHARNLRAGFVQVPFGREIVKGATERVRSLYHKDFVIDEDGRWLLQGWKGRIIYALSAWK 753
                     **************************************************************888*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    
MVMDPGFRGF SGFQLRNQTV SVFPSQPVSV FPNQNFVAGP RFQNTYIDHN FREFDYHPPD  60
PTPSNIAPIS SLSHEEDPSE DCDFSDSVLR YINHILLEED VEDKSCMLQE SLDLQAAEKS  120
FYDVLGKKYP PSPSPEQNST FVYESGEKPD DSFVGNCGSY FSSCSDGSSY VVDTGQMQNL  180
GDYSTTQAQS LPVSGMSQSS YSSSMASIDG LMESPNSTLQ VPDWNGEIQS IWQFRKGVEE  240
ASKFIPRSEE LFGNLEVCGV ESQESKGWTR GLVVKEESKD EGEYSPTGSK GRKISHRDDV  300
EIEEERCSKQ AAVYSESTVR SEMFDMVLLC SSGKGPTHFT NLRESLRNGN SKNVQQNGQS  360
KGPNGGKGRG KKQNGKKEVV DLRTLLIHCA QAVAADDRRS ANELLKQIRQ HTSPFGDGNQ  420
RLAHCFADGL EARLAGTGSQ IYKGLVSKRT SASDILKAYL LYVAACPFRK VSHFICNKTI  480
NVASRKSMKL HVIDFGILYG FQWPTLIERL SLRSEGPPKL RITGIDFPQP GFRPAERVEE  540
TGRRLAAYAK EFKVPFQYNA IAKKWDNIRV EELDIHEDEF VVVNCLYRAK NLLDETVAVD  600
SPRNIVLNLA RKINPNIFIH GIMNGAYNAP FFVTRFREAL FHFSSMFDML ETIVPREDWE  660
RVLIEKEILG REALNVIACE GWERVERPET FKQWHARNLR AGFVQVPFGR EIVKGATERV  720
RSLYHKDFVI DEDGRWLLQG WKGRIIYALS AWKPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein