PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021289934.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family C2H2
Protein Properties Length: 173aa    MW: 18927 Da    PI: 6.3612
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021289934.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-052850123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C+k Fs+   L  H++ H
  XP_021289934.1 28 YTCSFCKKGFSSAQALGGHMNIH 50
                    9********************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    
METKHPKGEK SDQIVWSLED LPGQAKSYTC SFCKKGFSSA QALGGHMNIH RKDRAKLRES  60
SEENILSLDM LKTINPPDDH SQVSEIVLES SEEKSSSPRR PSKLSREDEG GSASASASVS  120
PGGKDAIKTS GESEKESLRL IHGSTSQIVL DLELRLGPDP DQNQTKKSTR ECF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.17e-20C2H2 family protein