PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021289826.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 437aa MW: 47698.3 Da PI: 9.4219

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021289826.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.6e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_021289826.1 6 FICEICNKGFQRDQNLQLHRRGH 28 89*******************88 PP
2	zf-C2H2	13	0.00031	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ XP_021289826.1 82 WKCEKCSKKYAVQSDWKAHSKTC 104 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTNK EVRKKVYICP EKTCVHHDPS 60 RALGDLTGIK KHYSRKHGEK KWKCEKCSKK YAVQSDWKAH SKTCGTREYK CDCGTLFSRK 120 DSFITHRAFC DALAEESARL TSVAATNLNF RNDTVNLPHG FAGRGVQDIA GISQFGSGFG 180 QDFTGMPAAG LPEMVQMASG NLFGSSSLTN FDNHGHFPGF DKSGATSTNA NLSLSPLPQG 240 LKEEGGSKGN LMESLSSLYS ETQNKQPKPA APMSATALLQ KAAQMGSTRS NPSFFGNSFG 300 VMSSSSSHTV SLSATQDRND QLHQVYPNHV KEQETFMASS SVSMSTDAGL GSSNLNSMAS 360 STSNNLEQLM LQTGAKHSDS SQLKMHHPGS TSIDQSLTRD FLGMSNDQSA RPFLPQELAK 420 FASIGSTMGL SQFTSNH

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTNK EVRKKVYICP EKTCVHHDPS  60
RALGDLTGIK KHYSRKHGEK KWKCEKCSKK YAVQSDWKAH SKTCGTREYK CDCGTLFSRK  120
DSFITHRAFC DALAEESARL TSVAATNLNF RNDTVNLPHG FAGRGVQDIA GISQFGSGFG  180
QDFTGMPAAG LPEMVQMASG NLFGSSSLTN FDNHGHFPGF DKSGATSTNA NLSLSPLPQG  240
LKEEGGSKGN LMESLSSLYS ETQNKQPKPA APMSATALLQ KAAQMGSTRS NPSFFGNSFG  300
VMSSSSSHTV SLSATQDRND QLHQVYPNHV KEQETFMASS SVSMSTDAGL GSSNLNSMAS  360
STSNNLEQLM LQTGAKHSDS SQLKMHHPGS TSIDQSLTRD FLGMSNDQSA RPFLPQELAK  420
FASIGSTMGL SQFTSNH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	45	KLRQRTNKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	1e-114	C2H2 family protein