PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021289739.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

E2F/DP

Protein Properties

Length: 405aa MW: 44961.7 Da PI: 6.9129

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021289739.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	86.9	1.5e-27	153	235	2	71
E2F_TDP 2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 ++++Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg XP_021289739.1 153 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpsnsvaspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 235 689******...*999***************************************************.*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence
MDNFNMNFSS TLLTNKEDLS SSCAVSACDV INLSFTSIKL FSGPIYVLWS IRYGNWSNHI 60 QNHNHXEDGE KNPTKGGASR SWXTTVSGQS VSTSGSVGSP SSRSEQAMAT PASENTFLRL 120 NHLDIHGDDA GSQGAVGSKK KKRGQRAVGG DKSGRGLRQF SMKVCEKVES KGRTTYNEVA 180 DELVAEFADP SNSVASPDQQ QYDEKNIRRR VYDALNVLMA MDIISKDKKE IQWKGLPRTS 240 LNDIEELKTE RLGRRNRIEK KAAYLQELEE QFVGLQNLIQ RNEQLYSAGN APSGGVALPF 300 ILVQTRPHAT VEVEISEDMQ LVHFDFNSTP FELHDDNYVL KAMKFCDRPQ SDEMAHNFSA 360 DGEGSSMSAM YQQQIPPPPR TNTSGRPPTS PPLPGILKAR VKHEH

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence

MDNFNMNFSS TLLTNKEDLS SSCAVSACDV INLSFTSIKL FSGPIYVLWS IRYGNWSNHI  60
QNHNHXEDGE KNPTKGGASR SWXTTVSGQS VSTSGSVGSP SSRSEQAMAT PASENTFLRL  120
NHLDIHGDDA GSQGAVGSKK KKRGQRAVGG DKSGRGLRQF SMKVCEKVES KGRTTYNEVA  180
DELVAEFADP SNSVASPDQQ QYDEKNIRRR VYDALNVLMA MDIISKDKKE IQWKGLPRTS  240
LNDIEELKTE RLGRRNRIEK KAAYLQELEE QFVGLQNLIQ RNEQLYSAGN APSGGVALPF  300
ILVQTRPHAT VEVEISEDMQ LVHFDFNSTP FELHDDNYVL KAMKFCDRPQ SDEMAHNFSA  360
DGEGSSMSAM YQQQIPPPPR TNTSGRPPTS PPLPGILKAR VKHEH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03415.1	1e-156	E2F/DP family protein