PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021289379.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 302aa MW: 32728.3 Da PI: 4.3087

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021289379.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.2e-05	275	298	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg+sF + L++H + H XP_021289379.1 275 FPCKSCGRSFGSENALQSHSKAkH 298 89*****************88777 PP

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence
MEFWGAEVKT GQIFEVELED DGSRILHLSQ VALGEVTGDN KKEKGNETVC IYLKINDEKF 60 VIGTLSQEKF PQIPLDLVLH DKFELSHTWK NGSVHFTGYY VDTSQGGDSQ SEEELPVPTI 120 NPIKPHATES DPTTSKQVKI AEPKKEEDSS DDEDEDDTSA EDEETSDDQE PGMLVNGENE 180 SDDDTDSDED DSDEESSDED QETPEKAEPS KKRPAESATK TPAPEKKAKL VTPQKTDGKK 240 VGGHTATPHP SKQGGKASAA TGQVKQNPKS GGSPFPCKSC GRSFGSENAL QSHSKAKHGA 300 AV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03740.1	5e-28	C2H2 family protein