PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021289256.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family C2H2
Protein Properties Length: 288aa    MW: 31362.3 Da    PI: 7.1674
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021289256.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017192214123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  Fs+   L  H+r+H
  XP_021289256.1 192 HECSICGAEFSSGQALGGHMRRH 214
                     78********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MMMMEGQEEV VLCKDQLQII KGKRTKRPRP LSPLTLVMAS STTSSGGESG GEGGRNTDDS  60
GGFERAVASP TTSVDELTEI STEEEEDMAN CLILLAQGQT RIKPSEPASL ATTSKTGIYV  120
HQCKTCNRCF SSFQALGGHR ASHKKPKVNN EENKGLVFVR EDDDQFNNMN TALSLQITNK  180
AVLCNSSKSK VHECSICGAE FSSGQALGGH MRRHRTFTNV PTTTATTALS VGTRSPESQE  240
SKKPRTVLQL DLNLPAPEDD HLRETKFSFA SKEKLLVFSA SSLVDCHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12630KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.16e-57C2H2 family protein