PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021289184.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family B3
Protein Properties Length: 338aa    MW: 38074.8 Da    PI: 6.7681
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021289184.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.51.1e-32100202199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k ltpsdv+k++rlv+pk++ae++      +g+  ++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+++F+++++++
  XP_021289184.1 100 FEKPLTPSDVGKLNRLVIPKQHAEKYfplggdSGD--KGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKQLDAGDVILFERHRTEG 192
                     99***************************955444..6779************************************************988899 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++++r+
  XP_021289184.1 193 DRLFIGWRRR 202
                     99******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MEPTQNSPSS KLHKPSITLE NSPWTSHFYP HQSWINSYNN PQDHPLHPSM FFPSNHPSRK  60
FNLNQDEDEE LDDQTSIDNT QNPNQNPHEN PLDHEREPMF EKPLTPSDVG KLNRLVIPKQ  120
HAEKYFPLGG DSGDKGLLLS FEDESGKCWR FRYSYWNSSQ SYVLTKGWSR YVKEKQLDAG  180
DVILFERHRT EGDRLFIGWR RRGAAVAVAA AADAGNSAMG NSGVGGGNEG WSRGLHQGHP  240
YLGHIQGHGA NVPYQPDCLH AGSIAQNQAP AGNPKRLLRL FGVNLECQLD ESEPSTPDSS  300
SVSSQGPTHH QFYSQSHNSN YMDITFSRDI KHMRNHRG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.12e-58B3 family protein