PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021289090.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

E2F/DP

Protein Properties

Length: 495aa MW: 54547.7 Da PI: 5.5079

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021289090.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	84.5	8.5e-27	172	237	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l++++e+g+++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+i+wkg XP_021289090.1 172 RYDSSLGLLTKKFINLIKHAEDGMLDLNKAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIHWKG 237 6899****************************...99..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence
MSGGARASAR PTPPHPPPPP SAISSPASAG PSIVPPIRRH LAFASTKPSF VHPDDYHRFS 60 SNNNNNYPNN GLTSASNARG AVAYQEVEAI VVRSPQFKRK STVNKNEVES SHWTSSPGVS 120 SISNSPFKTP VSAKGGRLNN RSKASKANKS TPQTPMSNAG SLSPLTPAGS CRYDSSLGLL 180 TKKFINLIKH AEDGMLDLNK AAETLEVQKR RIYDITNVLE GIGLIEKKLK NRIHWKGVDA 240 SRPGEADGDV SILQAEIENL SFEENRLDDH IREMQERLRD LSENENNQRW LFVTEEDIKG 300 IPCFQNETLI AIKAPHGTTL EVPDPDEAVD YPQRRYRIIL RSTMGPIDVY LVSQFEEKFE 360 ELNGVEPPVR LPLASSSGSN ENQVELVNMD STRKEVEPYA QTHQMGSDIN ASQESVGGMM 420 RIVPSDVDND ADYWLLSDAD VSITDMWKTD SGVEWSGVDV LHADFGMADV STPRRESSPS 480 RMTEVPSSDF NSTHR

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence

MSGGARASAR PTPPHPPPPP SAISSPASAG PSIVPPIRRH LAFASTKPSF VHPDDYHRFS  60
SNNNNNYPNN GLTSASNARG AVAYQEVEAI VVRSPQFKRK STVNKNEVES SHWTSSPGVS  120
SISNSPFKTP VSAKGGRLNN RSKASKANKS TPQTPMSNAG SLSPLTPAGS CRYDSSLGLL  180
TKKFINLIKH AEDGMLDLNK AAETLEVQKR RIYDITNVLE GIGLIEKKLK NRIHWKGVDA  240
SRPGEADGDV SILQAEIENL SFEENRLDDH IREMQERLRD LSENENNQRW LFVTEEDIKG  300
IPCFQNETLI AIKAPHGTTL EVPDPDEAVD YPQRRYRIIL RSTMGPIDVY LVSQFEEKFE  360
ELNGVEPPVR LPLASSSGSN ENQVELVNMD STRKEVEPYA QTHQMGSDIN ASQESVGGMM  420
RIVPSDVDND ADYWLLSDAD VSITDMWKTD SGVEWSGVDV LHADFGMADV STPRRESSPS  480
RMTEVPSSDF NSTHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36010.1	0.0	E2F/DP family protein