PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021289064.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Trihelix

Protein Properties

Length: 475aa MW: 53952 Da PI: 6.3185

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021289064.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	77.6	2e-24	103	202	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 +Wt+++v++Li a+ +++++ +++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +++ +++++++ ++ XP_021289064.1 103 KWTDSMVRLLIMAVYYIGDEAGSEGndpagkkkaggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGRGtACKVVENQSL 197 7************99888876433677788999999******************************************559****** PP trihelix 82 fdqle 86 +d ++ XP_021289064.1 198 LDTMD 202 *9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence
MVVSSLLGML GLEMPLHPQQ QQQPQNPQSA QNPHQLHHHP QMVAYSHHET DQSQHQQSVK 60 QGYPFASKTK QLSPLSDEDE PGFTPDDGAA DAKRKISPWQ RMKWTDSMVR LLIMAVYYIG 120 DEAGSEGNDP AGKKKAGGLL QKKGKWKSVS RAMMEKGFYV SPQQCEDKFN DLNKRYKRVN 180 DILGRGTACK VVENQSLLDT MDLSPKMKEE VRKLLNSKHL FFREMCAYHN SCGHGATAGA 240 SGANHSPEVA TETSQIQHQQ ASNQQRCLHS SDAAQIAGNS GRMDPEASKL AKVGSEEEDD 300 DEDDDSDDDE DEDDEEAMDG HSRGHNGHGQ EDDEDNDEKS SRKRPRKGAF AMSLSPLMQQ 360 LSCEVVNVIQ DGSKSAWEKK HWMKMRLMQL EEQQVSYQYQ AFELEKQRLK WVKFSGKKER 420 EMEKAKLENE RRRLENERMV LLVRQKELEF VDVQHQHQPQ QHSSSKRGDP STITG

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence

MVVSSLLGML GLEMPLHPQQ QQQPQNPQSA QNPHQLHHHP QMVAYSHHET DQSQHQQSVK  60
QGYPFASKTK QLSPLSDEDE PGFTPDDGAA DAKRKISPWQ RMKWTDSMVR LLIMAVYYIG  120
DEAGSEGNDP AGKKKAGGLL QKKGKWKSVS RAMMEKGFYV SPQQCEDKFN DLNKRYKRVN  180
DILGRGTACK VVENQSLLDT MDLSPKMKEE VRKLLNSKHL FFREMCAYHN SCGHGATAGA  240
SGANHSPEVA TETSQIQHQQ ASNQQRCLHS SDAAQIAGNS GRMDPEASKL AKVGSEEEDD  300
DEDDDSDDDE DEDDEEAMDG HSRGHNGHGQ EDDEDNDEKS SRKRPRKGAF AMSLSPLMQQ  360
LSCEVVNVIQ DGSKSAWEKK HWMKMRLMQL EEQQVSYQYQ AFELEKQRLK WVKFSGKKER  420
EMEKAKLENE RRRLENERMV LLVRQKELEF VDVQHQHQPQ QHSSSKRGDP STITG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	7e-90	Trihelix family protein