PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021289025.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

WRKY

Protein Properties

Length: 361aa MW: 40044.2 Da PI: 5.2431

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021289025.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.3	8.9e-30	131	192	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK++ g+++pr+YYrCt++ gC ++k+v+rs++dp+++eitY+g+H+++ XP_021289025.1 131 LDDGFSWRKYGQKDILGAKHPRGYYRCTHRnvqGCLATKQVQRSDDDPTIFEITYRGRHTCT 192 59*************************98999************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MENMGEWEQR SLVNELTQGR ELARQLQVHL NVPSSHESRE SLVQKIQASY EKALSMLNYN 60 TSLAADQPQP SGLAIRMSES PPSRSGSPRS EDSDRDCKEQ ELKDASKKRK TLPRWTQLVR 120 VTPGTALEGP LDDGFSWRKY GQKDILGAKH PRGYYRCTHR NVQGCLATKQ VQRSDDDPTI 180 FEITYRGRHT CTLASHVMPP SGPSENQEQG TCMEPQQPEQ NQSQSQDLLL NFQRGLKVIT 240 EDLGIDEPTY PSFPYPSSTT SNIKLENNVF SPSVIDNNVV GNLSTSFISP ATSGTGYFSM 300 SPSPSGMNNT VPGNINFPST SEPQLSTEII QAATSATNSP FPFGNPEFDP NFTFDNHGFF 360 S

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MENMGEWEQR SLVNELTQGR ELARQLQVHL NVPSSHESRE SLVQKIQASY EKALSMLNYN  60
TSLAADQPQP SGLAIRMSES PPSRSGSPRS EDSDRDCKEQ ELKDASKKRK TLPRWTQLVR  120
VTPGTALEGP LDDGFSWRKY GQKDILGAKH PRGYYRCTHR NVQGCLATKQ VQRSDDDPTI  180
FEITYRGRHT CTLASHVMPP SGPSENQEQG TCMEPQQPEQ NQSQSQDLLL NFQRGLKVIT  240
EDLGIDEPTY PSFPYPSSTT SNIKLENNVF SPSVIDNNVV GNLSTSFISP ATSGTGYFSM  300
SPSPSGMNNT VPGNINFPST SEPQLSTEII QAATSATNSP FPFGNPEFDP NFTFDNHGFF  360
S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	110	LKDASKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11070.1	4e-53	WRKY family protein