PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021288813.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 299aa    MW: 32765.8 Da    PI: 5.0707
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021288813.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-13193238655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  + a++L +AveY+k+Lq
  XP_021288813.1 193 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLDEAVEYVKYLQ 238
                     689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MQPTPGGSGS SSGGGELSRG GLARYRSAPA TWLEALLEEE EEDPLKPNQC LTQLLTANST  60
APATRDSGPF SSSADPAGLF EPTGFQRQNS SPADFLGNNS GAASDAYFTN FGIPANYDYL  120
STNIDASPSS KRARELDTQY PPTKFQSQLK GEQRGQISSG VSNLIDMDME KLLEDSVPCR  180
VRAKRGCATH PRSIAERVRR TRISDRIRKL QELVPNMDKQ TNTADMLDEA VEYVKYLQKQ  240
IEITKMESFS LAPMENFSCK SPDFKGHMRV GTTLIWLLSL LNSVEYGTEQ GPVVVVIVL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.12e-81bHLH family protein