PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021288753.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 438aa    MW: 49464.1 Da    PI: 6.5914
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021288753.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS414.97.2e-127474381374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykal.pps..etseknsseelaal........kl 83 
                     +++lL++cAe vs++d+ +a++lL+ ls ++s +gd+++Rl++ ft+AL+ r++r ++++    + + +   ++ + +++++a +        ++
  XP_021288753.1  47 MRQLLISCAELVSQSDFPAANRLLSILSSNSSIYGDSTERLVHQFTKALSLRINRlHCPGSLLMMmNINypIAAATATATAIANYdidpslqsCY 141
                     589****************************************************7666533332122200222233444444444555544411 PP

            GRAS  84 ..fsevsPilkfshltaNqaIleave.geervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAee 171
                       +++++P+++f+hltaNqaIlea++ g++ +Hi+Dfdi++G+QWp+L+qaLa+R+    ++pp++RiTg g+    + + l++tg+rL kfA++
  XP_021288753.1 142 lsLNQITPFIRFAHLTANQAILEAIQvGQQSIHILDFDIMHGVQWPPLMQALAERSannlHPPPMIRITGTGH----DLNILQRTGDRLFKFAQS 232
                     67***********************9466***************************888888***********....9***************** PP

            GRAS 172 lgvpfefnvl...vak...rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                     lg++f+f++l     +   +++   +++L + p+EalaVn+++ lhrll+++       + +L+ +k ++P vv+++e+ea+hn++ Fl+rf+ea
  XP_021288753.1 233 LGLRFQFHPLlvlN-NdptSVALNLPSTLTILPDEALAVNCMFYLHRLLKDDSRDL---RLFLHNIKAMNPAVVTIAEREANHNHPLFLQRFIEA 323
                     *********96531.21212333357899********************6665554...59********************************** PP

            GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee 354
                     l+yy+a+fdslea+lp++s+er  vE+ ++greiv++va+eg++rrerhe+le+W+  l+++GF++vpls++a +qaklllr ++ s+gyr++ +
  XP_021288753.1 324 LDYYTAIFDSLEATLPPNSRERLAVEQIWFGREIVDIVAAEGENRRERHESLETWEVILRSSGFSNVPLSSFAHSQAKLLLRLHYpSEGYRLQIH 418
                     *********************************************************************************************** PP

            GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                     ++s++lgW++r+L+svS+Wr
  XP_021288753.1 419 NNSFFLGWQNRALFSVSSWR 438
                     *******************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    
MLGSLNSTSH DQEEEDPSAT DLQQQQQQPS HSTGFTSNSH SQQAIHMRQL LISCAELVSQ  60
SDFPAANRLL SILSSNSSIY GDSTERLVHQ FTKALSLRIN RLHCPGSLLM MMNINYPIAA  120
ATATATAIAN YDIDPSLQSC YLSLNQITPF IRFAHLTANQ AILEAIQVGQ QSIHILDFDI  180
MHGVQWPPLM QALAERSANN LHPPPMIRIT GTGHDLNILQ RTGDRLFKFA QSLGLRFQFH  240
PLLVLNNDPT SVALNLPSTL TILPDEALAV NCMFYLHRLL KDDSRDLRLF LHNIKAMNPA  300
VVTIAEREAN HNHPLFLQRF IEALDYYTAI FDSLEATLPP NSRERLAVEQ IWFGREIVDI  360
VAAEGENRRE RHESLETWEV ILRSSGFSNV PLSSFAHSQA KLLLRLHYPS EGYRLQIHNN  420
SFFLGWQNRA LFSVSSWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-130GRAS family protein