PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021288407.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 130aa MW: 13671.3 Da PI: 8.6486 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.3 | 1.5e-16 | 13 | 49 | 14 | 50 |
HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 14 skRrngilKKAeELSvLCdaevaviifsstgklyeys 50 skRr ++KKA ELS+LC+a+va++ +s +gk+ +++ XP_021288407.1 13 SKRRGNLFKKAAELSTLCGARVAIVTISDEGKVTTFP 49 9***********************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence |
MGKQQKSGKA GTSKRRGNLF KKAAELSTLC GARVAIVTIS DEGKVTTFPD SDTVIQSYLA 60 GKVSSRSASG GNALRDSRRK GCKEGGTKQG VEEGAGETRQ GKEKVCDVAA EEGGGLMLKD 120 LNEAWDEQCD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-13 | M-type_MADS family protein |