PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021288282.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

NF-YB

Protein Properties

Length: 223aa MW: 24441.4 Da PI: 6.8804

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021288282.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	168.5	8.3e-53	49	145	1	97
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 vreqd+++Pianv+rim+++lPa+akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa+++lGf+dyvepl+v+l +yre e+ XP_021288282.1 49 VREQDQYMPIANVIRIMRRILPAHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVFLGRYRESES 143 69********************************************************************************************9 PP NF-YB 96 ek 97 e+ XP_021288282.1 144 ER 145 87 PP

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence
MERGDGFNRF HKHAKSSSGL SVIQPGDSSN TNNGGNTAKS STMPPPCMVR EQDQYMPIAN 60 VIRIMRRILP AHAKISDDAK ETIQECVSEY ISFITGEANE RCQREQRKTI TAEDVLWAMG 120 KLGFDDYVEP LTVFLGRYRE SESERTSLRG EPILKRGIDY GPMMMAPPYG PGLHMGHHHQ 180 GIFDAAAAAA AMGGFYRDGS GAAGSSSSQA SLTNNFDPFG QFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21970.1	2e-65	NF-YB family protein