PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021288058.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family HB-other
Protein Properties Length: 363aa    MW: 39611.6 Da    PI: 7.1824
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021288058.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.32e-061374655
                    S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
        Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                    +ft++++ e+e+  ++  n+ p +e    LA+k            ++ +qV +WFqNrR+  
  XP_021288058.1 13 RFTPTEVAEMETILQEhqNQMPVREILVSLAEKFsesadrkgkiVVQFKQVWNWFQNRRYAI 74
                    699999******999656999********************9999999***********865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    
MGRPPSNGGP AFRFTPTEVA EMETILQEHQ NQMPVREILV SLAEKFSESA DRKGKIVVQF  60
KQVWNWFQNR RYAIRAKSSK VPGKLNITSM PRDDVNPVRT VPQPIAAPMP PPMTAPMPVA  120
MPASTVPGAG RPTSEHSYME FEAKSSRDGA WYDVSTFLAH RYLDTGDPEV QVRFAGFGPE  180
EDEWVNIRKH VRQRSLPCEA SECVAVLPGD LILCFQVDFH LQLPSNDGIQ EIVPLRKVCR  240
RPETDYRLQQ LHASNDSAST DQQKTSTDPS TATAPRVISS PTETMLKQQN PDASRTAPVS  300
HANVSVAAQT TNPESKNTGT MTTNITNPVA SNPGISPSGA VFASSIAVGT ATGGFGQNMQ  360
EGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.31e-115HB-other family protein