PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021287474.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | YABBY | ||||||||
Protein Properties | Length: 181aa MW: 20398.1 Da PI: 8.7611 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 171.5 | 5.5e-53 | 6 | 158 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 +s++eq+Cy+ Cn Cn ilav+vP +slf++vtvrCG Ct+l svnla++ +a ++ + ++++++ s+s+ + XP_021287474.1 6 TSAPEQLCYIPCNLCNIILAVNVPCSSLFETVTVRCGQCTNLCSVNLATSFPSRAGKDI----------QAPSYTSSEYRIDL-----GSSSRCK 85 6899*******************************************998877777663..........22222222222222.....2223333 PP YABBY 99 eklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +kl++ + + + + v+rPP+kr r+Ps yn+fikeeiqrik +nPdi+hreafs+aaknWa fP+ihfgl XP_021287474.1 86 NKLPKRATTVNTTPERvVNRPPDKRHRAPSLYNQFIKEEIQRIKLNNPDITHREAFSTAAKNWARFPHIHFGL 158 3333333333322222389****************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence |
MSSSNTSAPE QLCYIPCNLC NIILAVNVPC SSLFETVTVR CGQCTNLCSV NLATSFPSRA 60 GKDIQAPSYT SSEYRIDLGS SSRCKNKLPK RATTVNTTPE RVVNRPPDKR HRAPSLYNQF 120 IKEEIQRIKL NNPDITHREA FSTAAKNWAR FPHIHFGLML ETDNQPKLND DSTEHFQQLL 180 K |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.1 | 2e-79 | YABBY family protein |