PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021287397.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

WRKY

Protein Properties

Length: 681aa MW: 74979.5 Da PI: 8.2821

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021287397.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.2	5.1e-31	446	504	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+rsa+d +++++tYeg+Hnh+ XP_021287397.1 446 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRSADDRTILITTYEGNHNHP 504 7*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence
MILKLGQRDL SLGPFVQVFA PVCLSLNFFK TLFLFHNFVE DSSPNVSLTK KRAIINLRHS 60 KALFKCRVHC TPPLLPKRLE RNPLYTSSLS LLHHFFAPHF CVDEGGTGAR RLSFDHTVDA 120 ATSVFNPKPS LFGLGLFRSS CKPDPAAWKQ AAFDMEQDDQ HVESSDGMKR VVNEMDFFGS 180 GGRSSSKEEA KADVKMESEH QGLVQEDDAP AEADVNTGLN LLTTNIVSKK SVPGDRTSQN 240 LKDKERVNQL ADIRAELERI NAENQRLKVT LNQVNSNYYA LQMHLVSLMQ RQQNRRDESS 300 EASEMNRTTE EKRHGEAIVA RQFMDLGQAA KAEKDELSES SSDGRVQEFS GSPGNAIVES 360 MERRQTNSSR NYETVPSDPI SRKDLMDPGR NQREDTPEGR PHPGWLPSKV PKFNTSRDVE 420 LAQETMAMIR KARVSVRARS EASMISDGCQ WRKYGQKMAK GNPCPRAYYR CTMATGCPVR 480 KQVQRSADDR TILITTYEGN HNHPLPPAAM AMASTTSAAA SMLLSGSMPS ADGIMNSSTI 540 LPKGIMLPCS PNLVTLSASA PFPTVTLDLT YNPNQRPTSQ LLAPSPNIPH LLGHPIYNQS 600 KLLGLFSSQG IEHHPHLAQN QMQPPHPVAD TVSAATAAIT ADPNFTAALV AAITSIIGNP 660 HRDNSGNNNS PTSRNTGDNN T

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence

MILKLGQRDL SLGPFVQVFA PVCLSLNFFK TLFLFHNFVE DSSPNVSLTK KRAIINLRHS  60
KALFKCRVHC TPPLLPKRLE RNPLYTSSLS LLHHFFAPHF CVDEGGTGAR RLSFDHTVDA  120
ATSVFNPKPS LFGLGLFRSS CKPDPAAWKQ AAFDMEQDDQ HVESSDGMKR VVNEMDFFGS  180
GGRSSSKEEA KADVKMESEH QGLVQEDDAP AEADVNTGLN LLTTNIVSKK SVPGDRTSQN  240
LKDKERVNQL ADIRAELERI NAENQRLKVT LNQVNSNYYA LQMHLVSLMQ RQQNRRDESS  300
EASEMNRTTE EKRHGEAIVA RQFMDLGQAA KAEKDELSES SSDGRVQEFS GSPGNAIVES  360
MERRQTNSSR NYETVPSDPI SRKDLMDPGR NQREDTPEGR PHPGWLPSKV PKFNTSRDVE  420
LAQETMAMIR KARVSVRARS EASMISDGCQ WRKYGQKMAK GNPCPRAYYR CTMATGCPVR  480
KQVQRSADDR TILITTYEGN HNHPLPPAAM AMASTTSAAA SMLLSGSMPS ADGIMNSSTI  540
LPKGIMLPCS PNLVTLSASA PFPTVTLDLT YNPNQRPTSQ LLAPSPNIPH LLGHPIYNQS  600
KLLGLFSSQG IEHHPHLAQN QMQPPHPVAD TVSAATAAIT ADPNFTAALV AAITSIIGNP  660
HRDNSGNNNS PTSRNTGDNN T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-108	WRKY family protein