PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021287368.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

GRAS

Protein Properties

Length: 469aa MW: 51427.7 Da PI: 5.9789

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021287368.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	260	8.4e-80	223	469	1	249
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL+ cA+++s++++ ++l+a+ ++ +s g+p+qRl ay++eAL ar s+s++y+al+++e + ++ l+++++++e++P+lkf++ XP_021287368.1 223 LKKLLIVCAQVLSENNMDDFDKLIAKARNAVSICGEPIQRLGAYMVEALVARKEASGSNIYRALRCREPE---GKDLLSYMQILYEICPYLKFGY 314 5799***************************************************************9...9***************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 ++aN aI ea +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+ + le++g+rLa++ e++++p+ef+ v d XP_021287368.1 315 MAANGAIAEACRTEDRIHIIDFQIAQGTQWVTLLQALAARPGGAPHVRITGIDDPLSKyaRGGGLEAVGRRLASLSEKFNIPVEFHG-VPVFAPD 408 **************************************************999989999********************.6888999 PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249 ++ e+L+v+pgEalaVn+ lqlh+++desv+++++rd +L++vkslsPkv ++veqe+++n XP_021287368.1 409 ITREMLDVRPGEALAVNFPLQLHHTPDESVDVNNPRDGLLRMVKSLSPKVTTLVEQESNTN 469 ********************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MDAHRLFRYG VTGASLSYST SYSTVPSIPN RLFSSSKSDI GSSPNSPFSS QFDSPFSTQF 60 DCDTNTTLSD SQEQHSSTEN LSGLSSSCNS SLESNTYFHK LSPSLDCKRE ILPLCSGGTS 120 YIQDANSSHK IIYTLQELET ALMAPDADEE VTTPNVSCGE SSRQQTAGQR SRAWSQEHQG 180 SLVLQPQTSF VSRHRQSTEV SNAEKRQKAI QDLSLQGIPP GNLKKLLIVC AQVLSENNMD 240 DFDKLIAKAR NAVSICGEPI QRLGAYMVEA LVARKEASGS NIYRALRCRE PEGKDLLSYM 300 QILYEICPYL KFGYMAANGA IAEACRTEDR IHIIDFQIAQ GTQWVTLLQA LAARPGGAPH 360 VRITGIDDPL SKYARGGGLE AVGRRLASLS EKFNIPVEFH GVPVFAPDIT REMLDVRPGE 420 ALAVNFPLQL HHTPDESVDV NNPRDGLLRM VKSLSPKVTT LVEQESNTN

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MDAHRLFRYG VTGASLSYST SYSTVPSIPN RLFSSSKSDI GSSPNSPFSS QFDSPFSTQF  60
DCDTNTTLSD SQEQHSSTEN LSGLSSSCNS SLESNTYFHK LSPSLDCKRE ILPLCSGGTS  120
YIQDANSSHK IIYTLQELET ALMAPDADEE VTTPNVSCGE SSRQQTAGQR SRAWSQEHQG  180
SLVLQPQTSF VSRHRQSTEV SNAEKRQKAI QDLSLQGIPP GNLKKLLIVC AQVLSENNMD  240
DFDKLIAKAR NAVSICGEPI QRLGAYMVEA LVARKEASGS NIYRALRCRE PEGKDLLSYM  300
QILYEICPYL KFGYMAANGA IAEACRTEDR IHIIDFQIAQ GTQWVTLLQA LAARPGGAPH  360
VRITGIDDPL SKYARGGGLE AVGRRLASLS EKFNIPVEFH GVPVFAPDIT REMLDVRPGE  420
ALAVNFPLQL HHTPDESVDV NNPRDGLLRM VKSLSPKVTT LVEQESNTN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.1	1e-108	GRAS family protein