PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021287254.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

M-type_MADS

Protein Properties

Length: 374aa MW: 42065.7 Da PI: 6.4496

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021287254.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	74.3	9.7e-24	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRr+gilKKA+ELS+LCd+++ +++fs+tg+ XP_021287254.1 9 KRLESTSNRQVTYSKRRTGILKKAKELSILCDIDIILLMFSPTGR 53 689****************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MGRVKLKIKR LESTSNRQVT YSKRRTGILK KAKELSILCD IDIILLMFSP TGRPTLFHGE 60 HSNIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNILDFIGAT SQSVEEMTNE 120 VSMLQAQLTE VHKRLSYWSN PDKIDNIEHL RQMEDILRES IERIRIHKEN FGKHHLMSLE 180 CTSQFQNGIP LPMMIGGVQE AQPVTWLPNN DNQHMLLHNE PSFLSHRDAE CSADGSFAGY 240 SGFFGSGKQI EIGSSGQVDN VVQESSALNE LGSNACLSLQ LGEQYLYPPY SASNLQDDEK 300 LKPEMEVNLP GNPAGYQVVS NFEIPRPMYN SGPQARISSS GPCGIMMFDG NSYHQQTKST 360 FMNQTPPSGE LHNL

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MGRVKLKIKR LESTSNRQVT YSKRRTGILK KAKELSILCD IDIILLMFSP TGRPTLFHGE  60
HSNIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNILDFIGAT SQSVEEMTNE  120
VSMLQAQLTE VHKRLSYWSN PDKIDNIEHL RQMEDILRES IERIRIHKEN FGKHHLMSLE  180
CTSQFQNGIP LPMMIGGVQE AQPVTWLPNN DNQHMLLHNE PSFLSHRDAE CSADGSFAGY  240
SGFFGSGKQI EIGSSGQVDN VVQESSALNE LGSNACLSLQ LGEQYLYPPY SASNLQDDEK  300
LKPEMEVNLP GNPAGYQVVS NFEIPRPMYN SGPQARISSS GPCGIMMFDG NSYHQQTKST  360
FMNQTPPSGE LHNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-108	M-type_MADS family protein