PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021287248.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Protein Properties

Length: 416aa MW: 47913.8 Da PI: 7.5533

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021287248.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.8	3.6e-17	19	105	4	94
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +l+ s+ l+ + l++p kf++++g + s +tl ++sgr W v+l k ++r+++ +GW+ F + +++g f+vF+++g+s f+ +v XP_021287248.1 19 KLIVSSILQDKKLRIPHKFVKKYGDE--LSSIVTLATPSGRFWLVEL--MKDRRRMWFDSGWNVFLEYYSICVGYFLVFRYEGNSHFNVHV 105 566788889999*********865..7789***********..99999*******************************6655 PP
2	B3	64.1	2.1e-20	315	405	4	98
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +l ps+v k +l +p+ fa++h +g+ + t+tl+ ++g++W v++ +g+ + kGW eFv +n+L+egD++vF+l++++e l+v++f XP_021287248.1 315 ILRPSYVYKGILLHIPRWFARKHlNGV--N-GTITLQVSEGKKWPVRC--IHVDGHLKFCKGWAEFVLDNNLDEGDVCVFELISTQEIVLKVTIF 404 5789*****************8666..2.38***********..6666778899*********************999999999999 PP - CS B3 98 r 98 r XP_021287248.1 405 R 405 8 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MSQPVGPALP EKKPCIFYKL IVSSILQDKK LRIPHKFVKK YGDELSSIVT LATPSGRFWL 60 VELMKDRRRM WFDSGWNVFL EYYSICVGYF LVFRYEGNSH FNVHVYNLAA SEINYLSNGL 120 NNSEEPSPDE HVKNIEDGDL AQIMGSCPKC SSSYFLTDKD SDECLDHDRK KHKNTTCGAD 180 LKNLHQKNDM RDLQATFQLT QGKGTQLNVV ELTSPADEGG PYFLNETHRI TRKIKQETEP 240 SKLHELKNFL YRVFLVDFIR PNSLKDIDEQ EEELPAVNTP RNIARRWRDV TTEEKQSAFH 300 AAATFKPDNP FCRIILRPSY VYKGILLHIP RWFARKHLNG VNGTITLQVS EGKKWPVRCI 360 HVDGHLKFCK GWAEFVLDNN LDEGDVCVFE LISTQEIVLK VTIFRVLEDA GPVNKL

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MSQPVGPALP EKKPCIFYKL IVSSILQDKK LRIPHKFVKK YGDELSSIVT LATPSGRFWL  60
VELMKDRRRM WFDSGWNVFL EYYSICVGYF LVFRYEGNSH FNVHVYNLAA SEINYLSNGL  120
NNSEEPSPDE HVKNIEDGDL AQIMGSCPKC SSSYFLTDKD SDECLDHDRK KHKNTTCGAD  180
LKNLHQKNDM RDLQATFQLT QGKGTQLNVV ELTSPADEGG PYFLNETHRI TRKIKQETEP  240
SKLHELKNFL YRVFLVDFIR PNSLKDIDEQ EEELPAVNTP RNIARRWRDV TTEEKQSAFH  300
AAATFKPDNP FCRIILRPSY VYKGILLHIP RWFARKHLNG VNGTITLQVS EGKKWPVRCI  360
HVDGHLKFCK GWAEFVLDNN LDEGDVCVFE LISTQEIVLK VTIFRVLEDA GPVNKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49480.1	6e-46	B3 family protein