PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021287085.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

SBP

Protein Properties

Length: 271aa MW: 29865.1 Da PI: 7.2835

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021287085.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	48.9	1.7e-15	23	54	47	78
SSEEETTT--SS--S-STTTT-------S--- CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78 s fh+l+efDe+krsCr+rL++hn+rrrk+q+ XP_021287085.1 23 SLFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 54 78***************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence
MQQAEFSPPL SPTIFFSIWW SSSLFHSLEE FDEGKRSCRK RLDGHNRRRR KPQPDPLSRS 60 GSYFSNYQGT QMLPFSNLPV YPSTTVVKPT WPGVTDSGTD SRHLNQQQQL HSPEKQNLVL 120 GSSSSNYRGG KQFMFLQGEN NTPQNQTLPE ASVCQPLLRA TPFSEGSGGS HNVFWDRSTT 180 PVQDSDCALS LLSSPQTQTS GISLSSMVQP NSFPSVQPLG PSLQNHIIEP MDSVVVANGR 240 DTAVHCPGMF HMGSGGSSGN EAPQTLPFHW Q

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	35	52	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	9e-26	SBP family protein