PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021287081.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family LFY
Protein Properties Length: 391aa    MW: 43620.2 Da    PI: 6.8495
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021287081.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY642.27.5e-19613771386
         FLO_LFY   1 mdpeafsas.lfkwdpraaaaapparlleeaavseapleaaaaaaarklr......eleelfkayGvryltvakiaelGftvstLvdmkdeeldd 88 
                     mdpeaf++  +fkwdpr ++a++parl+e  a +++p++aaa+aaa+  r      ++eelf+ayG+ry+t+akiaelGftvstL++mk+eeld+
  XP_021287081.1   1 MDPEAFTTGgFFKWDPRGVVAPTPARLMEAVA-PPQPQTAAAVAAAYMGRgprelgGIEELFQAYGIRYYTAAKIAELGFTVSTLLGMKEEELDE 94 
                     9****98876*********9999999976665.555545555555555445667889************************************** PP

         FLO_LFY  89 lmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekksee 183
                     +m+s+s+ifr++llvGeryGikaavraerrrleee+  ++rr+l s d+++aldalsqeglseepvq+ekeaagsgg+g  ++e+v+a       
  XP_021287081.1  95 MMNSVSQIFRWELLVGERYGIKAAVRAERRRLEEED--SRRRHLASGDTTNALDALSQEGLSEEPVQQEKEAAGSGGGG--TWEVVVAGG----- 180
                     **********************************88..899999*******************************9999..999999983..... PP

         FLO_LFY 184 ekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcP 278
                      +kk+   + ++ +kk    e d+d+e e  ed+e++  +g erqrehPfivtepgevargkknGLDYLf+LyeqCrefL+qvq+iakerGekcP
  XP_021287081.1 181 -RKKQ---RCRKGQKKV--VEVDHDDELEGAEDDENGDIGGYERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKERGEKCP 269
                     .2333...222222222..33455555666667777888899***************************************************** PP

         FLO_LFY 279 tkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtk 373
                     tkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdida+fnahprL+iWYvPtk
  XP_021287081.1 270 TKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRAFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLAIWYVPTK 364
                     *********************************************************************************************** PP

         FLO_LFY 374 LrqLChlerskas 386
                     LrqLCh+er++a+
  XP_021287081.1 365 LRQLCHAERNSAA 377
                     *********9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    
MDPEAFTTGG FFKWDPRGVV APTPARLMEA VAPPQPQTAA AVAAAYMGRG PRELGGIEEL  60
FQAYGIRYYT AAKIAELGFT VSTLLGMKEE ELDEMMNSVS QIFRWELLVG ERYGIKAAVR  120
AERRRLEEED SRRRHLASGD TTNALDALSQ EGLSEEPVQQ EKEAAGSGGG GTWEVVVAGG  180
RKKQRCRKGQ KKVVEVDHDD ELEGAEDDEN GDIGGYERQR EHPFIVTEPG EVARGKKNGL  240
DYLFHLYEQC REFLIQVQNI AKERGEKCPT KVTNQVFRYA KKAGASYINK PKMRHYVHCY  300
ALHCLDEEAS NALRRAFKER GENVGAWRQA CYKPLVAIAA RQGWDIDAIF NAHPRLAIWY  360
VPTKLRQLCH AERNSAAASS SVSGGPDHMA F
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181187RKKQRCR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-162LFY family protein