PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021287049.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 310aa MW: 34196 Da PI: 5.4602

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021287049.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0012	7	28	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++C+++F + + H+r+H XP_021287049.1 7 TCKICNRRFASGKAMGGHMRSH 28 6*******************99 PP
2	zf-C2H2	13.3	0.00025	197	219	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+++F+++ L H +H XP_021287049.1 197 YKCETCNRVFKSHQALGGHRTSH 219 9**************99998887 PP
3	zf-C2H2	11.4	0.001	255	277	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k+F + L H ++H XP_021287049.1 255 FECPFCDKVFQSGQALGGHKKSH 277 89********9999999999988 PP

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence
MEKKSKTCKI CNRRFASGKA MGGHMRSHLA KLPIPPKLSL PSSSSTPPPN NNKSPPPSSA 60 LSRDPFSEVN HMQPYRSELS SETESPRNPT GRRSKRLRKV VLNIVGSPSD SVSSIVIPVI 120 PAETETLSSE DAAMCLLMLS RDSWTTIKKE QKEVYYESID DEEELDGDGD YDVDENENND 180 DDLFCVTNPG AKAHPKYKCE TCNRVFKSHQ ALGGHRTSHK NKQVFRASIE EGEEAEGEEC 240 GGSGGGDQIE QQRIFECPFC DKVFQSGQAL GGHKKSHFTY LAVADKVPEK SSAAQLFDLN 300 LPAPEYDDES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	6e-32	C2H2 family protein