PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021286566.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 452aa MW: 50800 Da PI: 4.6892

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021286566.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.2	1.7e-09	281	333	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54 +++ hn+ Er RR ++ ++ L l+P + +skK s i +AveYI +L XP_021286566.1 281 KKQEHNAKERIRRMKVHASYLALGALIPDsS---RSKKrKSAPLIIDRAVEYIPEL 333 6899***********************55...88888************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MSAPHLDNVS TIPEAADDLW PLVQENNSSL VLEPSMFHYQ EGRNIEKELL ENENVHQKDD 60 QDYSLSTSVH VVLDQWSFAR VSSSSSLPIM VADELDSLLF LQQENSPLPD HNIDKVLQKE 120 LQYGPSSEKG LLSPVYASDY ACSLLPFNST SLSIEDNVRT DELDSSRFVL EPLEPNIEEG 180 YNPIDNSLSA RLEDSDELVL LLQECSTPLP SMDEKTRVDK TDLSLVPEQE CSAVAEPSSG 240 EVLVAKRFSA KNRRRNNYRL KVLQTGNKEV QADEGEGSTV KKQEHNAKER IRRMKVHASY 300 LALGALIPDS SRSKKRKSAP LIIDRAVEYI PELEEEIEKL TLRKNDMLST IKHKQPLNQN 360 PHLKPDQDPS VSVHEIRQGE IITQIYSQIH PDDAFSNLLQ KVEEEGMCIM SASTLQVSDD 420 GVCYHLHIQL KASSGGASHL ASLREKVISW LR

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MSAPHLDNVS TIPEAADDLW PLVQENNSSL VLEPSMFHYQ EGRNIEKELL ENENVHQKDD  60
QDYSLSTSVH VVLDQWSFAR VSSSSSLPIM VADELDSLLF LQQENSPLPD HNIDKVLQKE  120
LQYGPSSEKG LLSPVYASDY ACSLLPFNST SLSIEDNVRT DELDSSRFVL EPLEPNIEEG  180
YNPIDNSLSA RLEDSDELVL LLQECSTPLP SMDEKTRVDK TDLSLVPEQE CSAVAEPSSG  240
EVLVAKRFSA KNRRRNNYRL KVLQTGNKEV QADEGEGSTV KKQEHNAKER IRRMKVHASY  300
LALGALIPDS SRSKKRKSAP LIIDRAVEYI PELEEEIEKL TLRKNDMLST IKHKQPLNQN  360
PHLKPDQDPS VSVHEIRQGE IITQIYSQIH PDDAFSNLLQ KVEEEGMCIM SASTLQVSDD  420
GVCYHLHIQL KASSGGASHL ASLREKVISW LR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71200.1	2e-22	bHLH family protein