PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021286444.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

TCP

Protein Properties

Length: 369aa MW: 41008.7 Da PI: 6.8906

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021286444.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	87.4	3.2e-27	49	188	3	134
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.....sec.eaesssssasnsssg... 88 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ + i+WL + k+ i++l+ ++ ++ +++ +++s+ss+ + XP_021286444.1 49 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSSLARYIDWLXDATKTDIDKLPPLQMPPGxgqfhQQMlXPHESNSSQ-----Ssla 138 79***********************************************************88888433322223333333333.....2344 PP TCP 89 ....kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134 ++a + + +++++ a+ +++++ rak+++ +re+t+ + k+ XP_021286444.1 139 pffeANAMFMKDGEDPSIAAKRYWDMDAALRAKSKEAERESTTAAEKGKW 188 67766777777888888899999***************8877766655 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MISSPREKDC QPKQEGETND GKFSKGSSSS RQWSGFRNPR IVRVSRSFGG KDRHSKVCTI 60 RGLRDRRIRL SVPTAIQLYD LQDRLGLSSL ARYIDWLXDA TKTDIDKLPP LQMPPGXGQF 120 HQQMLXPHES NSSQSSLAPF FEANAMFMKD GEDPSIAAKR YWDMDAALRA KSKEAEREST 180 TAAEKGKWIK VTEQHENQDG IGDYNGQASS QKHFPVANHS SLPGLSNNAT PFNPYYHWEP 240 SSLSLSQFGN HGFLSQTENF LHGNTTVPLP SSLALPSAHA PQLFFCPPST MPSLFPTYPP 300 YVTTTPGDSS DSRQINHFQL LSSNSQHILP NSVTMSPSMK PFSLNVNAGL STHTQNDDES 360 HAEEDNIDS

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MISSPREKDC QPKQEGETND GKFSKGSSSS RQWSGFRNPR IVRVSRSFGG KDRHSKVCTI  60
RGLRDRRIRL SVPTAIQLYD LQDRLGLSSL ARYIDWLXDA TKTDIDKLPP LQMPPGXGQF  120
HQQMLXPHES NSSQSSLAPF FEANAMFMKD GEDPSIAAKR YWDMDAALRA KSKEAEREST  180
TAAEKGKWIK VTEQHENQDG IGDYNGQASS QKHFPVANHS SLPGLSNNAT PFNPYYHWEP  240
SSLSLSQFGN HGFLSQTENF LHGNTTVPLP SSLALPSAHA PQLFFCPPST MPSLFPTYPP  300
YVTTTPGDSS DSRQINHFQL LSSNSQHILP NSVTMSPSMK PFSLNVNAGL STHTQNDDES  360
HAEEDNIDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	3e-42	TCP family protein