PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021286140.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

SBP

Protein Properties

Length: 560aa MW: 60695.4 Da PI: 7.3579

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021286140.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.4	3.5e-42	176	251	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dl++ k+yh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q XP_021286140.1 176 CQVYGCNKDLASSKDYHKRHKVCEVHSKTATVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQ 251 **************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence
MESWSYVSGE KGSVSDAAIS PSDSYARNRS ALMNWELKGP YSFSNNMLVS GQQAIENHAF 60 GELGNGEFIG KQLPNDSIGD ILNSKVTRGR TVNPIMATLN AFSGEDESTS KFSSSVVDSN 120 SRDSSLIDLK LGRFPDHRDG QSSSFSIGAP ILSSSESSTP PKRVRAAGVN SHTTYCQVYG 180 CNKDLASSKD YHKRHKVCEV HSKTATVIVN GIEQRFCQQC SRFHLLAEFD DGKRSCRKRL 240 AGHNERRRKP QIGIHSGRSG RLLQQYNGFA GGRFHGTMLT TTSFICQDIL PSGLLHPDKY 300 VTNEWGKRIK VEDGTDYSPL PTIPIMDGHL HLKSPYHPSG IEKLFPSFHG NEANAATGGI 360 LSVNNARYPH DFGGPNSVSR PLFQDTSLGS EDINVFDAAS TIQGLSGISD SGCALSLLSS 420 QSQNSSSHSS GIPMSRSLVI PGSHTHYNMS QVSEKLIGVS SQASTTGVSN KFSSSGMNST 480 EGSHVGPLLI SDGGEAANFD ISGGIYQGSE FMNTKDRLSC EDGPTIDLLH LSSQLQRVEH 540 QRQSMQVKHE NEAFCCLRIT

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence

MESWSYVSGE KGSVSDAAIS PSDSYARNRS ALMNWELKGP YSFSNNMLVS GQQAIENHAF  60
GELGNGEFIG KQLPNDSIGD ILNSKVTRGR TVNPIMATLN AFSGEDESTS KFSSSVVDSN  120
SRDSSLIDLK LGRFPDHRDG QSSSFSIGAP ILSSSESSTP PKRVRAAGVN SHTTYCQVYG  180
CNKDLASSKD YHKRHKVCEV HSKTATVIVN GIEQRFCQQC SRFHLLAEFD DGKRSCRKRL  240
AGHNERRRKP QIGIHSGRSG RLLQQYNGFA GGRFHGTMLT TTSFICQDIL PSGLLHPDKY  300
VTNEWGKRIK VEDGTDYSPL PTIPIMDGHL HLKSPYHPSG IEKLFPSFHG NEANAATGGI  360
LSVNNARYPH DFGGPNSVSR PLFQDTSLGS EDINVFDAAS TIQGLSGISD SGCALSLLSS  420
QSQNSSSHSS GIPMSRSLVI PGSHTHYNMS QVSEKLIGVS SQASTTGVSN KFSSSGMNST  480
EGSHVGPLLI SDGGEAANFD ISGGIYQGSE FMNTKDRLSC EDGPTIDLLH LSSQLQRVEH  540
QRQSMQVKHE NEAFCCLRIT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	2e-51	SBP family protein