PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021286105.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 424aa MW: 46920.7 Da PI: 8.4877

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021286105.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	52	1.2e-16	234	281	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++hn ErrRRdriN+++ +L++l+P+a K +Ka++L +++eY+k+Lq XP_021286105.1 234 ATHNLSERRRRDRINQKMRTLQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 281 69***********************9.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MNQCVVPNWN LKHKRQEQVE EEEGNRSSHV LNSSNTHLVP MSNYEVAELT WENGQLAMHG 60 LSGLLPTAPP TKPTWGRSND TLESIVHQAT CNKQKQNFNL LQHDQTRSNR SSIAAASMGN 120 WAESSSRLPV AAAAALLKKR ARSDSDQSGK NQSGGIQEDR ADRSACASAS AAFCRDNDTT 180 MMTWASHESP QSMKTKTADE DSSYHDGSEN RDEDMETRGE TGRSHSTRRS RAAATHNLSE 240 RRRRDRINQK MRTLQKLVPN ASKTDKASML DEVIEYLKQL QAQVQMMSMR SMPPMMMPLG 300 MQQHLQMSLL ARMGIGMLDI NSMARFPSQS LPPLMHPSPV TAPTPAFLPP FVAPPMIPTR 360 GPAQANSDAI SNASVPLPDP YCAFLAQSVN MDLYSKMAAL YRPQINQTTQ TASSPSRSNN 420 VQED

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MNQCVVPNWN LKHKRQEQVE EEEGNRSSHV LNSSNTHLVP MSNYEVAELT WENGQLAMHG  60
LSGLLPTAPP TKPTWGRSND TLESIVHQAT CNKQKQNFNL LQHDQTRSNR SSIAAASMGN  120
WAESSSRLPV AAAAALLKKR ARSDSDQSGK NQSGGIQEDR ADRSACASAS AAFCRDNDTT  180
MMTWASHESP QSMKTKTADE DSSYHDGSEN RDEDMETRGE TGRSHSTRRS RAAATHNLSE  240
RRRRDRINQK MRTLQKLVPN ASKTDKASML DEVIEYLKQL QAQVQMMSMR SMPPMMMPLG  300
MQQHLQMSLL ARMGIGMLDI NSMARFPSQS LPPLMHPSPV TAPTPAFLPP FVAPPMIPTR  360
GPAQANSDAI SNASVPLPDP YCAFLAQSVN MDLYSKMAAL YRPQINQTTQ TASSPSRSNN  420
VQED

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	143	LKKRARS
2	240	245	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	2e-34	bHLH family protein