PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021285786.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 457aa MW: 50111.9 Da PI: 7.6903

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021285786.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.3e-05	74	96	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+k F r nL+ H r H XP_021285786.1 74 YICEVCHKGFQRDQNLQLHRRGH 96 89*******************88 PP
2	zf-C2H2	13.2	0.00027	150	172	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + XP_021285786.1 150 WKCDKCSKRYAVQSDWKAHTKIC 172 58*****************9987 PP
3	zf-C2H2	11.1	0.0012	180	198	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsrk+++++H + XP_021285786.1 180 DCGTIFSRKDSFVTHRAFC 198 8**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence
MSNFVQDFEE DEQFPSTVIS HSSNESPNPV ENGGDASTPT TTSSKKKRNL PGNPDPDAEV 60 VALSPKTLMA TNRYICEVCH KGFQRDQNLQ LHRRGHNLPW KLKQRTNTPV KKRVYVCPEL 120 NCVHHDPSRA LGDLTGIKKH FCRKHGEKKW KCDKCSKRYA VQSDWKAHTK ICGTREYRCD 180 CGTIFSRKDS FVTHRAFCDA LTEENYKMNH NLAASGGILQ SQAQELFTSS MPSSDSCSNA 240 NTMMNLSVSN EKMDNSPRPL SLNPAGVMIS SNLDPIFNPR TSLASPLAIG SAYTSATALL 300 QKAAEMGAKI SDNTIAPILL RGFTGYSTGS MNSAGSAQEG SSMVGSNIAT NAASTNSLFV 360 GDETYDKNLE AGDLRCHHTV APTALFDSHF LDSENGNATN LLGEAYMRGG EKMTVDFLGV 420 EPAGHQSTDK KRSYDGNIMN LEYSNAQQSL NNLRSNW

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence

MSNFVQDFEE DEQFPSTVIS HSSNESPNPV ENGGDASTPT TTSSKKKRNL PGNPDPDAEV  60
VALSPKTLMA TNRYICEVCH KGFQRDQNLQ LHRRGHNLPW KLKQRTNTPV KKRVYVCPEL  120
NCVHHDPSRA LGDLTGIKKH FCRKHGEKKW KCDKCSKRYA VQSDWKAHTK ICGTREYRCD  180
CGTIFSRKDS FVTHRAFCDA LTEENYKMNH NLAASGGILQ SQAQELFTSS MPSSDSCSNA  240
NTMMNLSVSN EKMDNSPRPL SLNPAGVMIS SNLDPIFNPR TSLASPLAIG SAYTSATALL  300
QKAAEMGAKI SDNTIAPILL RGFTGYSTGS MNSAGSAQEG SSMVGSNIAT NAASTNSLFV  360
GDETYDKNLE AGDLRCHHTV APTALFDSHF LDSENGNATN LLGEAYMRGG EKMTVDFLGV  420
EPAGHQSTDK KRSYDGNIMN LEYSNAQQSL NNLRSNW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-113	C2H2 family protein